===> Testing for seqan3-3.3.0 -- Finding SeqAn3 and checking requirements: -- SeqAn3 include dir found: /usr/ports/biology/seqan3/work/seqan3-3.3.0/include -- Detected as running from a repository checkout… -- …adding submodule include: /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -- C++ Standard-20 support: via -std=c++20 -- Thread support: via -pthread -- Required dependency: SDSL found. -- Optional dependency: Cereal found. -- Optional dependency: ZLIB-1.2.13 found. -- Optional dependency: BZip2-1.0.8 found. -- Optional dependency: libexecinfo found. -- SeqAn3 platform.hpp build: passed. -- Test dependency: Google Test 1.14.0 found. -- Configuring done (1.9s) You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_CXX_COMPILER= g++13 -- The CXX compiler identification is GNU 13.1.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/bin/g++13 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Finding SeqAn3 and checking requirements: -- SeqAn3 include dir found: /usr/ports/biology/seqan3/work/seqan3-3.3.0/include -- Detected as running from a repository checkout… -- …adding submodule include: /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -- C++ Standard-20 support: via -std=c++20 -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Thread support: via -pthread -- Required dependency: SDSL found. -- Optional dependency: Cereal found. -- Optional dependency: ZLIB-1.2.13 found. -- Optional dependency: BZip2-1.0.8 found. -- Optional dependency: libexecinfo found. -- SeqAn3 platform.hpp build: passed. -- Found SeqAn3: /usr/ports/biology/seqan3/work/seqan3-3.3.0/include -- Finding program ccache -- Finding program ccache - Success -- Test dependency: Google Test 1.14.0 found. -- Configuring done (6.7s) -- Generating done (1.1s) -- Build files have been written to: /usr/ports/biology/seqan3/work/seqan3-3.3.0/.test [ 0% 10/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o -MF alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o.d -o alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/configuration/align_config_band_test.cpp [ 0% 11/622] : && /usr/local/bin/g++13 alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o -o alignment/configuration/align_config_band_test -pthread /usr/lib/libz.so /usr/lib/libbz2.so -lexecinfo -lelf -lpthread -lgtest_main -lgtest && cd /usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration && /usr/local/bin/cmake -D TEST_TARGET=align_config_band_test -D TEST_EXECUTABLE=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration/align_config_band_test -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration -D TEST_EXTRA_ARGS= -D "TEST_PROPERTIES=TIMEOUT;30" -D TEST_PREFIX=alignment/configuration/align_config_band_test:: -D TEST_SUFFIX= -D TEST_FILTER= -D NO_PRETTY_TYPES=FALSE -D NO_PRETTY_VALUES=FALSE -D TEST_LIST=align_config_band_test_TESTS -D CTEST_FILE=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration/align_config_band_test[1]_tests.cmake -D TEST_DISCOVERY_TIMEOUT=5 -D TEST_XML_OUTPUT_DIR= -P /usr/local/share/cmake/Modules/GoogleTestAddTests.cmake FAILED: alignment/configuration/align_config_band_test alignment/configuration/align_config_band_test[1]_tests.cmake /usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration/align_config_band_test[1]_tests.cmake : && /usr/local/bin/g++13 alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o -o alignment/configuration/align_config_band_test -pthread /usr/lib/libz.so /usr/lib/libbz2.so -lexecinfo -lelf -lpthread -lgtest_main -lgtest && cd /usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration && /usr/local/bin/cmake -D TEST_TARGET=align_config_band_test -D TEST_EXECUTABLE=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration/align_config_band_test -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration -D TEST_EXTRA_ARGS= -D "TEST_PROPERTIES=TIMEOUT;30" -D TEST_PREFIX=alignment/configuration/align_config_band_test:: -D TEST_SUFFIX= -D TEST_FILTER= -D NO_PRETTY_TYPES=FALSE -D NO_PRETTY_VALUES=FALSE -D TEST_LIST=align_config_band_test_TESTS -D CTEST_FILE=/usr/ports/biology/seqan3/work/seqan3-3.3.0/.test/alignment/configuration/align_config_band_test[1]_tests.cmake -D TEST_DISCOVERY_TIMEOUT=5 -D TEST_XML_OUTPUT_DIR= -P /usr/local/share/cmake/Modules/GoogleTestAddTests.cmake /usr/local/bin/ld: alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o: in function `band_fixed_size_config_element_Test::TestBody()': align_config_band_test.cpp:(.text+0x77): undefined reference to `testing::internal::GetBoolAssertionFailureMessage[abi:cxx11](testing::AssertionResult const&, char const*, char const*, char const*)' /usr/local/bin/ld: alignment/configuration/CMakeFiles/align_config_band_test.dir/align_config_band_test.cpp.o: in function `testing::AssertionResult testing::internal::CmpHelperEQFailure(char const*, char const*, int const&, int const&)': align_config_band_test.cpp:(.text._ZN7testing8internal18CmpHelperEQFailureIiiEENS_15AssertionResultEPKcS4_RKT_RKT0_[_ZN7testing8internal18CmpHelperEQFailureIiiEENS_15AssertionResultEPKcS4_RKT_RKT0_]+0x6c): undefined reference to `testing::internal::EqFailure(char const*, char const*, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)' collect2: error: ld returned 1 exit status [ 0% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/configuration/CMakeFiles/align_config_min_score_test.dir/align_config_min_score_test.cpp.o -MF alignment/configuration/CMakeFiles/align_config_min_score_test.dir/align_config_min_score_test.cpp.o.d -o alignment/configuration/CMakeFiles/align_config_min_score_test.dir/align_config_min_score_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/configuration/align_config_min_score_test.cpp [ 0% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/configuration/CMakeFiles/align_config_gap_cost_affine_test.dir/align_config_gap_cost_affine_test.cpp.o -MF alignment/configuration/CMakeFiles/align_config_gap_cost_affine_test.dir/align_config_gap_cost_affine_test.cpp.o.d -o alignment/configuration/CMakeFiles/align_config_gap_cost_affine_test.dir/align_config_gap_cost_affine_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp [ 0% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/CMakeFiles/exception_test.dir/exception_test.cpp.o -MF alignment/CMakeFiles/exception_test.dir/exception_test.cpp.o.d -o alignment/CMakeFiles/exception_test.dir/exception_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/exception_test.cpp [ 0% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/configuration/CMakeFiles/align_config_edit_test.dir/align_config_edit_test.cpp.o -MF alignment/configuration/CMakeFiles/align_config_edit_test.dir/align_config_edit_test.cpp.o.d -o alignment/configuration/CMakeFiles/align_config_edit_test.dir/align_config_edit_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/configuration/align_config_edit_test.cpp [ 1% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/cigar_conversion/CMakeFiles/cigar_from_alignment_test.dir/cigar_from_alignment_test.cpp.o -MF alignment/cigar_conversion/CMakeFiles/cigar_from_alignment_test.dir/cigar_from_alignment_test.cpp.o.d -o alignment/cigar_conversion/CMakeFiles/cigar_from_alignment_test.dir/cigar_from_alignment_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/cigar_conversion/cigar_from_alignment_test.cpp [ 1% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/cigar_conversion/CMakeFiles/alignment_from_cigar_test.dir/alignment_from_cigar_test.cpp.o -MF alignment/cigar_conversion/CMakeFiles/alignment_from_cigar_test.dir/alignment_from_cigar_test.cpp.o.d -o alignment/cigar_conversion/CMakeFiles/alignment_from_cigar_test.dir/alignment_from_cigar_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/cigar_conversion/alignment_from_cigar_test.cpp [ 1% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/aligned_sequence/CMakeFiles/debug_stream_alignment_test.dir/debug_stream_alignment_test.cpp.o -MF alignment/aligned_sequence/CMakeFiles/debug_stream_alignment_test.dir/debug_stream_alignment_test.cpp.o.d -o alignment/aligned_sequence/CMakeFiles/debug_stream_alignment_test.dir/debug_stream_alignment_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/aligned_sequence/debug_stream_alignment_test.cpp [ 1% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -MF alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o.d -o alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/aligned_sequence_test.cpp [ 1% 11/622] /usr/local/bin/ccache /usr/local/bin/g++13 -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/test/include -I/usr/ports/biology/seqan3/work/seqan3-3.3.0/include -isystem /usr/ports/biology/seqan3/work/seqan3-3.3.0/submodules/sdsl-lite/include -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -pthread -MD -MT alignment/configuration/CMakeFiles/align_config_common_test.dir/align_config_common_test.cpp.o -MF alignment/configuration/CMakeFiles/align_config_common_test.dir/align_config_common_test.cpp.o.d -o alignment/configuration/CMakeFiles/align_config_common_test.dir/align_config_common_test.cpp.o -c /usr/ports/biology/seqan3/work/seqan3-3.3.0/test/unit/alignment/configuration/align_config_common_test.cpp ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqan3