===> License BSD3CLAUSE accepted by the user ===> py38-PySCeS-1.0.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py38-PySCeS-1.0.1 for building ===> Extracting for py38-PySCeS-1.0.1 => SHA256 Checksum OK for pysces-1.0.1.tar.gz. ===> Patching for py38-PySCeS-1.0.1 ===> Applying FreeBSD patches for py38-PySCeS-1.0.1 from /disk-samsung/freebsd-ports/biology/py-PySCeS/files ===> py38-PySCeS-1.0.1 depends on package: py38-numpy>=1.16,1<1.21,1 - found ===> py38-PySCeS-1.0.1 depends on package: py38-ipython>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-matplotlib>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-nose>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-python-libsbml>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-scipy>0 - found ===> py38-PySCeS-1.0.1 depends on executable: gfortran10 - found ===> py38-PySCeS-1.0.1 depends on package: py38-setuptools>0 - found ===> py38-PySCeS-1.0.1 depends on file: /usr/local/bin/python3.8 - found ===> py38-PySCeS-1.0.1 depends on file: /usr/local/bin/as - found ===> Configuring for py38-PySCeS-1.0.1 setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.8/site-packages/pysces 'model_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces/psc 'output_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False Default configuration file installed extra_f77_compile_args: ['-lpython3.8', '-shared'] Building pitcon Building nleq2 running config ===> Building for py38-PySCeS-1.0.1 setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.8/site-packages/pysces 'model_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces/psc 'output_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False Default configuration file installed extra_f77_compile_args: ['-lpython3.8', '-shared'] Building pitcon Building nleq2 running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pysces.pitcon.pitcon" sources creating build creating build/src.freebsd-13.0-STABLE-amd64-3.8 creating build/src.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon f2py options: [] f2py: pysces/pitcon/pitcon.pyf Reading fortran codes... Reading file 'pysces/pitcon/pitcon.pyf' (format:free) Post-processing... Block: pitcon1__user__routines Block: pitcon1_user_interface Block: df Block: fx Block: pitcon Block: pitcon1 In: pysces/pitcon/pitcon.pyf:pitcon:unknown_interface:pitcon1 get_useparameters: no module pitcon1__user__routines info used by pitcon1 Post-processing (stage 2)... Building modules... Constructing call-back function "cb_df_in_pitcon1__user__routines" def df(x,[nvar]): return fjac,ierror Constructing call-back function "cb_fx_in_pitcon1__user__routines" def fx(x,[nvar]): return fvec,ierror Building module "pitcon"... Constructing wrapper function "pitcon1"... getarrdims:warning: assumed shape array, using 0 instead of '*' getarrdims:warning: assumed shape array, using 0 instead of '*' ierror,iwork,rwork,xr = pitcon1(df,fpar,fx,ipar,iwork,rwork,xr,[liw,nvar,lrw,imth,df_extra_args,fx_extra_args,overwrite_iwork,overwrite_rwork,overwrite_xr]) Wrote C/API module "pitcon" to file "build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.c" adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.c' to sources. adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon' to include_dirs. creating build/src.freebsd-13.0-STABLE-amd64-3.8/build creating build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8 creating build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon copying /usr/local/lib/python3.8/site-packages/numpy/f2py/src/fortranobject.c -> build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon copying /usr/local/lib/python3.8/site-packages/numpy/f2py/src/fortranobject.h -> build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon building extension "pysces.nleq2.nleq2" sources creating build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 f2py options: [] f2py: pysces/nleq2/nleq2.pyf Reading fortran codes... Reading file 'pysces/nleq2/nleq2.pyf' (format:free) Line #58 in pysces/nleq2/nleq2.pyf:"end python module nleq2.f " crackline:1: No pattern for line crackline: groupcounter=1 groupname={0: '', 1: 'python module', 2: 'interface', 3: 'subroutine'} crackline: Mismatch of blocks encountered. Trying to fix it by assuming "end" statement. Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: pysces/nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.c" adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.c' to sources. adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2' to include_dirs. creating build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 copying /usr/local/lib/python3.8/site-packages/numpy/f2py/src/fortranobject.c -> build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 copying /usr/local/lib/python3.8/site-packages/numpy/f2py/src/fortranobject.h -> build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.freebsd-13.0-STABLE-amd64-3.8 creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesPlot.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesParScan.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesParse.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesRandom.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesInterfaces.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesContribUser.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesModelMap.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesLink.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesSBML.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/version.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesModel.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesScan.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/RateChar.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/_multicorescan.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesPlot2.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesJWSParse.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesUtils.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesContrib.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesTest.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesStoich.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesWeb.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesSED.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesConfig.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces copying pysces/PyscesMiniModel.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/tests copying pysces/tests/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/tests creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/lex.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/FirstDerivatives.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/pyparsing.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/miriamids.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib copying pysces/lib/yacc.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon copying pysces/pitcon/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/sandbox copying pysces/sandbox/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/sandbox copying pysces/sandbox/Intersect.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/sandbox creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib copying pysces/contrib/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/demo copying pysces/contrib/demo/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/demo copying pysces/contrib/demo/demotest.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/demo creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/PyscesCore2Interfaces.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/yacc.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/lex.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/InfixParser.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/PyscesCore2.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/PyscesCore2Modules.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 copying pysces/core2/version.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2 creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/KrakenNET.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/startup.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/KrakenDataTools.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/KrakenServer.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken copying pysces/kraken/Kraken.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kill_tentacles.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_continuation_eigen.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_intersect.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_continuation.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_continuation_eigen2.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_scanner2.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers creating build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 copying pysces/nleq2/__init__.py -> build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating /tmp/tmpf2gugg62/tmp creating /tmp/tmpf2gugg62/tmp/tmpf2gugg62 compile options: '-MMD -MF /tmp/tmpf2gugg62/file.c.d -c' cc: /tmp/tmpf2gugg62/file.c customize UnixCCompiler using build_ext CCompilerOpt.__init__[955] : unable to detect compiler type which leads to treating it as GCC. this is a normal behavior if you're using gcc-like compiler such as MinGW or IBM/XLC.check dist_info:<< ('freebsd-13.0-STABLE-amd64', 'cc', '-Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer') >> CCompilerOpt.cc_test_flags[999] : testing flags (-march=native) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating /tmp/tmpz0o1tipj/usr creating /tmp/tmpz0o1tipj/usr/local creating /tmp/tmpz0o1tipj/usr/local/lib creating /tmp/tmpz0o1tipj/usr/local/lib/python3.8 creating /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages creating /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy creating /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils creating /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils/checks compile options: '-I/usr/local/include/python3.8 -c' extra options: '-march=native' CCompilerOpt.cc_test_flags[999] : testing flags (-O3) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-O3' CCompilerOpt.cc_test_flags[999] : testing flags (-Werror) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-Werror' CCompilerOpt.__init__[1674] : check requested baseline CCompilerOpt.cc_test_flags[999] : testing flags (-msse) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse' CCompilerOpt.cc_test_flags[999] : testing flags (-msse2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse2' CCompilerOpt.feature_test[1444] : testing feature 'SSE' with flags (-msse -msse2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -Werror' CCompilerOpt.feature_test[1444] : testing feature 'SSE2' with flags (-msse -msse2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-msse3) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse3' CCompilerOpt.feature_test[1444] : testing feature 'SSE3' with flags (-msse -msse2 -msse3) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -Werror' CCompilerOpt.__init__[1683] : check requested dispatch-able features CCompilerOpt.cc_test_flags[999] : testing flags (-mssse3) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mssse3' CCompilerOpt.feature_test[1444] : testing feature 'SSSE3' with flags (-msse -msse2 -msse3 -mssse3) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-msse4.1) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse4.1' CCompilerOpt.cc_test_flags[999] : testing flags (-mpopcnt) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mpopcnt' CCompilerOpt.cc_test_flags[999] : testing flags (-msse4.2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse4.2' CCompilerOpt.feature_test[1444] : testing feature 'SSE42' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx' CCompilerOpt.cc_test_flags[999] : testing flags (-mf16c) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mf16c' CCompilerOpt.cc_test_flags[999] : testing flags (-mfma) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mfma' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx2' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512f) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512f' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512cd) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512cd' CCompilerOpt.feature_test[1444] : testing feature 'AVX512CD' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -Werror' CCompilerOpt.feature_test[1444] : testing feature 'FMA3' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -Werror' CCompilerOpt.feature_test[1444] : testing feature 'SSE41' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -Werror' CCompilerOpt.feature_test[1444] : testing feature 'AVX2' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2 -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512vl -mavx512bw -mavx512dq) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512vl -mavx512bw -mavx512dq' CCompilerOpt.feature_test[1444] : testing feature 'AVX512_SKX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' CCompilerOpt.feature_test[1444] : testing feature 'AVX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -Werror' CCompilerOpt.feature_test[1444] : testing feature 'POPCNT' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -Werror' CCompilerOpt.feature_test[1444] : testing feature 'AVX512F' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -Werror' CCompilerOpt.feature_test[1444] : testing feature 'F16C' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512vnni) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512vnni' CCompilerOpt.feature_test[1444] : testing feature 'AVX512_CLX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512er -mavx512pf) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512er -mavx512pf' CCompilerOpt.feature_test[1444] : testing feature 'AVX512_KNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq' CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC -I/usr/local/include/python3.8 -c /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/test_flags.c -o /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils/checks/test_flags.o.d -mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq) failed with exit status 1 output -> cc: error: unknown argument: '-mavx5124fmaps' cc: error: unknown argument: '-mavx5124vnniw' CCompilerOpt.cc_test_flags[1003] : testing failed CCompilerOpt.feature_test[1444] : testing feature 'AVX512_KNM' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror' CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC -I/usr/local/include/python3.8 -c /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c -o /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.o -MMD -MF /tmp/tmpz0o1tipj/usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.o.d -msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror) failed with exit status 1 output -> /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:9:9: error: implicit declaration of function '_mm512_4fmadd_ps' is invalid in C99 [-Werror,-Wimplicit-function-declaration] b = _mm512_4fmadd_ps(b, b, b, b, b, NULL); ^ /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:9:9: note: did you mean '_mm512_fmadd_ps'? /usr/lib/clang/12.0.1/include/avx512fintrin.h:2716:1: note: '_mm512_fmadd_ps' declared here _mm512_fmadd_ps(__m512 __A, __m512 __B, __m512 __C) ^ /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:9:7: error: assigning to '__m512' (vector of 16 'float' values) from incompatible type 'int' b = _mm512_4fmadd_ps(b, b, b, b, b, NULL); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:11:9: error: implicit declaration of function '_mm512_4dpwssd_epi32' is invalid in C99 [-Werror,-Wimplicit-function-declaration] a = _mm512_4dpwssd_epi32(a, a, a, a, a, NULL); ^ /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:11:9: note: did you mean '_mm512_dpwssd_epi32'? /usr/lib/clang/12.0.1/include/avx512vnniintrin.h:68:1: note: '_mm512_dpwssd_epi32' declared here _mm512_dpwssd_epi32(__m512i __S, __m512i __A, __m512i __B) ^ /usr/local/lib/python3.8/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:11:7: error: assigning to '__m512i' (vector of 8 'long long' values) from incompatible type 'int' a = _mm512_4dpwssd_epi32(a, a, a, a, a, NULL); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 errors generated. CCompilerOpt.feature_test[1458] : testing failed CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512ifma -mavx512vbmi) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512ifma -mavx512vbmi' CCompilerOpt.feature_test[1444] : testing feature 'AVX512_CNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi -Werror' CCompilerOpt.cc_test_flags[999] : testing flags (-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq' CCompilerOpt.feature_test[1444] : testing feature 'AVX512_ICL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq -Werror' CCompilerOpt.__init__[1695] : skip features (SSE2 SSE3 SSE) since its part of baseline CCompilerOpt.__init__[1699] : initialize targets groups CCompilerOpt.__init__[1701] : parse target group simd_test CCompilerOpt._parse_target_tokens[1910] : skip targets (VSX2 NEON ASIMD XOP VSX3 VSX FMA4) not part of baseline or dispatch-able features CCompilerOpt._parse_policy_not_keepbase[2022] : skip baseline features (SSE2) CCompilerOpt.generate_dispatch_header[2236] : generate CPU dispatch header: (build/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include/npy_cpu_dispatch_config.h) CCompilerOpt.generate_dispatch_header[2245] : dispatch header dir build/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include does not exist, creating it CCompilerOpt.feature_extra_checks[1519] : Testing extra checks for feature 'AVX512F' (AVX512F_REDUCE) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -Werror' CCompilerOpt.feature_extra_checks[1519] : Testing extra checks for feature 'AVX512_SKX' (AVX512BW_MASK AVX512DQ_MASK) C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC compile options: '-I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' Detected changes on compiler optimizations, force rebuilding get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran10 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'pysces.pitcon.pitcon' extension compiling C sources C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8 creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8 creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon compile options: '-Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon -I/usr/local/lib/python3.8/site-packages/numpy/core/include -Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include -I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3' cc: build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.c cc: build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.c In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.c:2: In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.h:13: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.c:16: In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.h:13: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.c:482:52: warning: code will never be executed [-Wunreachable-code] int itemsize_ = NPY_DOUBLE == NPY_STRING ? 1 : 0; ^ build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.c:677:52: warning: code will never be executed [-Wunreachable-code] int itemsize_ = NPY_DOUBLE == NPY_STRING ? 1 : 0; ^ 3 warnings generated. 1 warning generated. compiling Fortran sources Fortran f77 compiler: gfortran10 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran10 -Wall -g -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran10 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops creating build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces creating build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon compile options: '-Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon -I/usr/local/lib/python3.8/site-packages/numpy/core/include -Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include -I/usr/local/include/python3.8 -c' extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/pitcon/dpcon61.f extra f77 options: '-lpython3.8 -shared' extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/pitcon/dpcon61w.f gfortran10:f77: pysces/pitcon/pcon61subd.f pysces/pitcon/pcon61subd.f:961:72: 961 | 10 ASSIGN 30 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) pysces/pitcon/pcon61subd.f:966:20: 966 | 20 GO TO NEXT,(30, 50, 70, 110) | 1 Warning: Deleted feature: Assigned GOTO statement at (1) pysces/pitcon/pcon61subd.f:968:72: 968 | ASSIGN 50 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) pysces/pitcon/pcon61subd.f:977:72: 977 | ASSIGN 70 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) pysces/pitcon/pcon61subd.f:983:72: 983 | ASSIGN 110 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) pysces/pitcon/pcon61subd.f:1019:72: 1019 | 95 SUM = SUM + DX(J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1) pysces/pitcon/pcon61subd.f:996:5: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | 1 Warning: Label 110 at (1) defined but not used [-Wunused-label] pysces/pitcon/pcon61subd.f:991:5: 991 | 70 IF( DABS(DX(I)) .GT. CUTLO ) GO TO 75 | 1 Warning: Label 70 at (1) defined but not used [-Wunused-label] pysces/pitcon/pcon61subd.f:973:5: 973 | 50 IF( DX(I) .EQ. ZERO) GO TO 200 | 1 Warning: Label 50 at (1) defined but not used [-Wunused-label] pysces/pitcon/dpcon61.f:1782:5: 1782 | 700 CONTINUE | 1 Warning: Label 700 at (1) defined but not used [-Wunused-label] pysces/pitcon/dpcon61.f:1566:3: 1566 | 410 CONTINUE | 1 Warning: Label 410 at (1) defined but not used [-Wunused-label] pysces/pitcon/dpcon61.f:3671:27: 3671 | * IWORK,JAC,LIW,LOUNIT,NBAND,NEQN,NVAR,X,XTEMP,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] pysces/pitcon/dpcon61.f:3126:21: 3126 | * JAC,LIW,LOUNIT,NVAR,X,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] pysces/pitcon/dpcon61.f:2533:11: 2533 | 1 .OR.(P.GE.ONEP5*ABS(HALFUB*Q)-ABS(TOLER*Q))) THEN | ^ Warning: 'sdel3' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/pitcon/pcon61subd.f:997:72: 997 | SUM = ONE + SUM * (XMAX / DX(I))**2 | ^ Warning: 'xmax' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/pitcon/dpcon61.f:3060:72: Warning: 'lfxm' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/bin/gfortran10 -Wall -g -Wall -g -O -Wl,-rpath=/usr/local/lib/gcc10 -shared -lpython3.8 -shared -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitconmodule.o build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pcon61subd.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/dpcon61.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/dpcon61w.o -L/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd13.0/10.3.0 -L/usr/local/lib -lgfortran -o build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitcon.cpython-38.so building 'pysces.nleq2.nleq2' extension compiling C sources C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 creating build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 compile options: '-Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 -I/usr/local/lib/python3.8/site-packages/numpy/core/include -Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include -I/usr/local/include/python3.8 -c' extra options: '-msse -msse2 -msse3' cc: build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.c cc: build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.c In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.c:2: In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.h:13: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.c:16: In file included from build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.h:13: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944: /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.c:512:52: warning: code will never be executed [-Wunreachable-code] int itemsize_ = NPY_DOUBLE == NPY_STRING ? 1 : 0; ^ build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.c:707:52: warning: code will never be executed [-Wunreachable-code] int itemsize_ = NPY_DOUBLE == NPY_STRING ? 1 : 0; ^ 3 warnings generated. 1 warning generated. compiling Fortran sources Fortran f77 compiler: gfortran10 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran10 -Wall -g -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran10 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -funroll-loops creating build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 compile options: '-Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2 -I/usr/local/lib/python3.8/site-packages/numpy/core/include -Ibuild/src.freebsd-13.0-STABLE-amd64-3.8/numpy/distutils/include -I/usr/local/include/python3.8 -c' extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/nleq2/wnorm.f extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/nleq2/zibmon.f extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/nleq2/zibconst.f extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/nleq2/linalg_nleq2.f extra f77 options: '-lpython3.8 -shared' extra f77 options: '-lpython3.8 -shared' gfortran10:f77: pysces/nleq2/nleq2.f gfortran10:f77: pysces/nleq2/zibsec.f pysces/nleq2/zibmon.f:384:55-69: 384 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) pysces/nleq2/zibmon.f:394:55-69: 394 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) pysces/nleq2/linalg_nleq2.f:183:32: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | 1 Warning: Unused variable 'd1mach' declared at (1) [-Wunused-variable] pysces/nleq2/nleq2.f:1557:72: 1557 | $ ' FCCOR = ', D18.10, ' FC = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] pysces/nleq2/nleq2.f:1558:72: 1558 | $ ' DMYCOR = ', D18.10, ' FCNUMP = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] pysces/nleq2/nleq2.f:1388:20: 1388 | INTRINSIC DLOG | 1 Warning: Type specified for intrinsic function 'dlog' at (1) is ignored [-Wsurprising] pysces/nleq2/nleq2.f:1419:17: 1419 | TOLMIN = DSQRT(TEN*EPMACH) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pysces/nleq2/nleq2.f:1926:24: 1926 | FCH = FC | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pysces/nleq2/nleq2.f:1128:63: 1128 | $QA,A,DXSAVE,DX,DXQ,XA,XWA,F,FA,ETA,XW,FW,DXQA,QU,T1,T2,T3,FC, | 1 Warning: Unused dummy argument 't3' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:3106:51: 3106 | SUBROUTINE N2PRV2(DLEVF,DLEVX,FC,NITER,MPRMON,LUMON,QMIXIO, | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2675:61: 2675 | SUBROUTINE N2LVLS(N,DX1,XW,F,DXQ,CONV,SUMX,DLEVF,MPRMON,QDSCAL) | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2628:64: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'iopt' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2629:26: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'laiwk' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2629:41: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'larwk' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2628:39: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2628:42: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2520:39: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2520:42: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2383:52: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'qinisc' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:2383:66: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:974:57: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'iwk' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:974:66: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] pysces/nleq2/nleq2.f:974:27: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] pysces/nleq2/linalg_nleq2.f:392:72: 392 | S = DABS(D(IRANKC+1)/T) | ^ Warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/linalg_nleq2.f:373:15: 373 | IF (S.GT.-ONE) THEN | ^ Warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/linalg_nleq2.f:182:46: 182 | INTEGER I,II,IRANKH,IRK1,I1,J,JD,JJ,K,K1,LEVEL,MH, IDATA | ^ Warning: 'k1' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/linalg_nleq2.f:272:26: 272 | IF(T.LE.DD .OR. K.GT.IRANKH) THEN | ^ Warning: 'dd' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/linalg_nleq2.f:453:41: 453 | INTEGER I,II,I1,IRANC1,IRK1,J,JJ,J1,MH | ^ Warning: 'j1' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/nleq2.f:2351:72: 2351 | SUMX = SUMXA | ^ Warning: 'sumxa' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/nleq2.f:1829:72: 1829 | FCMON = DMIN1(FC,FCMON) | ^ Warning: 'fcmon' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/nleq2.f:2122:72: 2122 | FCA = FCK2 | ^ Warning: 'fck2' may be used uninitialized in this function [-Wmaybe-uninitialized] pysces/nleq2/nleq2.f:821:12: 821 | IF (QBDAMP) THEN | ^ Warning: 'qbdamp' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/bin/gfortran10 -Wall -g -Wall -g -O -Wl,-rpath=/usr/local/lib/gcc10 -shared -lpython3.8 -shared -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2module.o build/temp.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/linalg_nleq2.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/zibmon.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/zibsec.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/zibconst.o build/temp.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/wnorm.o -L/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd13.0/10.3.0 -L/usr/local/lib -lgfortran -o build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2.cpython-38.so ########### EXT COMPILER OPTIMIZATION ########### Platform : Architecture: x64 Compiler : unix-like CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none CCompilerOpt._cache_write[796] : write cache to path -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/pysces-1.0.1/build/temp.freebsd-13.0-STABLE-amd64-3.8/ccompiler_opt_cache_ext.py append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' ===> Staging for py38-PySCeS-1.0.1 ===> py38-PySCeS-1.0.1 depends on package: py38-numpy>=1.16,1<1.21,1 - found ===> py38-PySCeS-1.0.1 depends on package: py38-ipython>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-matplotlib>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-nose>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-python-libsbml>0 - found ===> py38-PySCeS-1.0.1 depends on package: py38-scipy>0 - found ===> py38-PySCeS-1.0.1 depends on executable: gfortran10 - found ===> py38-PySCeS-1.0.1 depends on package: py38-setuptools>0 - found ===> py38-PySCeS-1.0.1 depends on file: /usr/local/bin/python3.8 - found ===> Generating temporary packing list setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.8/site-packages/pysces 'model_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces/psc 'output_dir' :: /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False Default configuration file installed extra_f77_compile_args: ['-lpython3.8', '-shared'] Building pitcon Building nleq2 running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pysces.pitcon.pitcon" sources f2py options: [] adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/fortranobject.c' to sources. adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon' to include_dirs. building extension "pysces.nleq2.nleq2" sources f2py options: [] adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/fortranobject.c' to sources. adding 'build/src.freebsd-13.0-STABLE-amd64-3.8/build/src.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2' to include_dirs. building data_files sources build_src: building npy-pkg config files running build_py package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating /tmp/tmp49slfm59/tmp creating /tmp/tmp49slfm59/tmp/tmp49slfm59 compile options: '-MMD -MF /tmp/tmp49slfm59/file.c.d -c' cc: /tmp/tmp49slfm59/file.c customize UnixCCompiler using build_ext CCompilerOpt.__init__[758] : load cache from file -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/pysces-1.0.1/build/temp.freebsd-13.0-STABLE-amd64-3.8/ccompiler_opt_cache_ext.py CCompilerOpt.__init__[769] : hit the file cache get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran10 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8 creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/RateChar.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesLink.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/tests copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/tests/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/tests copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/version.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/demo copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/demo/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/demo copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/demo/demotest.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/demo copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/contrib/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesSED.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesScan.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesWeb.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesSBML.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesModel.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesRandom.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesPlot.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesParse.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesJWSParse.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesParScan.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesMiniModel.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/pyparsing.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/miriamids.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/lex.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/FirstDerivatives.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/lib/yacc.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pitcon copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/pitcon.cpython-38.so -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pitcon copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/pitcon/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pitcon copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesConfig.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesTest.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/_multicorescan.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/Kraken.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/startup.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/KrakenDataTools.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kraken_continuation_eigen2.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kraken_continuation_eigen.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kraken_continuation.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kill_tentacles.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kraken_scanner2.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/controllers/kraken_intersect.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/KrakenNET.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/kraken/KrakenServer.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesContribUser.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/nleq2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/nleq2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/nleq2/nleq2.cpython-38.so -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/nleq2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesModelMap.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesStoich.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesPlot2.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesContrib.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesUtils.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/PyscesCore2.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/version.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/lex.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/PyscesCore2Interfaces.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/yacc.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/PyscesCore2Modules.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/core2/InfixParser.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2 creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/sandbox copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/sandbox/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/sandbox copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/sandbox/Intersect.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/sandbox copying build/lib.freebsd-13.0-STABLE-amd64-3.8/pysces/PyscesInterfaces.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/RateChar.py to RateChar.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesLink.py to PyscesLink.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/version.py to version.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/demo/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/demo/demotest.py to demotest.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/contrib/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesSED.py to PyscesSED.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesScan.py to PyscesScan.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesWeb.py to PyscesWeb.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesSBML.py to PyscesSBML.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesModel.py to PyscesModel.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesRandom.py to PyscesRandom.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesPlot.py to PyscesPlot.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesParse.py to PyscesParse.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesJWSParse.py to PyscesJWSParse.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesParScan.py to PyscesParScan.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesMiniModel.py to PyscesMiniModel.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/pyparsing.py to pyparsing.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/miriamids.py to miriamids.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/lex.py to lex.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/FirstDerivatives.py to FirstDerivatives.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/lib/yacc.py to yacc.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pitcon/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesConfig.py to PyscesConfig.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesTest.py to PyscesTest.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/_multicorescan.py to _multicorescan.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/Kraken.py to Kraken.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/startup.py to startup.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/KrakenDataTools.py to KrakenDataTools.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kraken_continuation_eigen2.py to kraken_continuation_eigen2.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kraken_continuation_eigen.py to kraken_continuation_eigen.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kraken_continuation.py to kraken_continuation.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kill_tentacles.py to kill_tentacles.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kraken_scanner2.py to kraken_scanner2.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/controllers/kraken_intersect.py to kraken_intersect.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/KrakenNET.py to KrakenNET.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/kraken/KrakenServer.py to KrakenServer.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesContribUser.py to PyscesContribUser.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/nleq2/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesModelMap.py to PyscesModelMap.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesStoich.py to PyscesStoich.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesPlot2.py to PyscesPlot2.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesContrib.py to PyscesContrib.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesUtils.py to PyscesUtils.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/PyscesCore2.py to PyscesCore2.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/version.py to version.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/lex.py to lex.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/PyscesCore2Interfaces.py to PyscesCore2Interfaces.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/yacc.py to yacc.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/PyscesCore2Modules.py to PyscesCore2Modules.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/core2/InfixParser.py to InfixParser.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/sandbox/__init__.py to __init__.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/sandbox/Intersect.py to Intersect.cpython-38.pyc byte-compiling /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/PyscesInterfaces.py to PyscesInterfaces.cpython-38.pyc writing byte-compilation script '/tmp/tmp6jtho4n4.py' /usr/local/bin/python3.8 /tmp/tmp6jtho4n4.py removing /tmp/tmp6jtho4n4.py running install_data creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/pysces_test_moiety1.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/pysces_test_pitcon.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/pysces_test_linear1.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/lin5_hill.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/isola2a.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/pysces_test_branch1.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/pscmodels/Burstmodel.psc -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/pscmodels copying pysces/nleq2/nleq2_readme.txt -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/nleq2 copying pysces/pyscfg.ini -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying pysces/version.txt -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces copying pysces/pysces.pth -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/ creating /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/testratechar.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/benchmark.ipy -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/testinvalidstate.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/testRunScatter.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/__init__.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/parallelscan.ipy -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/testparscanner.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples copying pysces/examples/pysces_stochpy.py -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces/examples running install_clib customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer -fPIC creating /tmp/tmpc05_eoc8/tmp creating /tmp/tmpc05_eoc8/tmp/tmpc05_eoc8 compile options: '-MMD -MF /tmp/tmpc05_eoc8/file.c.d -c' cc: /tmp/tmpc05_eoc8/file.c running install_egg_info running egg_info writing pysces.egg-info/PKG-INFO writing dependency_links to pysces.egg-info/dependency_links.txt writing requirements to pysces.egg-info/requires.txt writing top-level names to pysces.egg-info/top_level.txt package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) reading manifest file 'pysces.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'setupegg.py' adding license file 'LICENSE' adding license file 'LICENCE.txt' writing manifest file 'pysces.egg-info/SOURCES.txt' Copying pysces.egg-info to /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/stage/usr/local/lib/python3.8/site-packages/pysces-1.0.1-py3.8.egg-info running install_scripts package init file 'pysces/kraken/controllers/__init__.py' not found (or not a regular file) writing list of installed files to '/disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/.PLIST.pymodtmp' ########### EXT COMPILER OPTIMIZATION ########### Platform : Architecture: x64 Compiler : unix-like CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none CCompilerOpt._cache_write[796] : write cache to path -> /disk-samsung/freebsd-ports/biology/py-PySCeS/work-py38/pysces-1.0.1/build/temp.freebsd-13.0-STABLE-amd64-3.8/ccompiler_opt_cache_ext.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa)