diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile index 72634c0e3506..062a368a2c2f 100644 --- a/biology/gemma/Makefile +++ b/biology/gemma/Makefile @@ -26,6 +26,8 @@ LDFLAGS+= -lopenblas OPTIONS_DEFINE= EXAMPLES +BROKEN= Conflict between math/gsl and math/cblas constant redeclarations + pre-configure: @${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh diff --git a/math/gsl/Makefile b/math/gsl/Makefile index 7cc00fab520b..558da29aee96 100644 --- a/math/gsl/Makefile +++ b/math/gsl/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= gsl -PORTVERSION= 2.5 -PORTREVISION= 1 +PORTVERSION= 2.6 CATEGORIES= math MASTER_SITES= GNU diff --git a/math/gsl/distinfo b/math/gsl/distinfo index 51580cef2e74..bbf53b1b2661 100644 --- a/math/gsl/distinfo +++ b/math/gsl/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1529158403 -SHA256 (gsl-2.5.tar.gz) = 0460ad7c2542caaddc6729762952d345374784100223995eb14d614861f2258d -SIZE (gsl-2.5.tar.gz) = 7303881 +TIMESTAMP = 1566551853 +SHA256 (gsl-2.6.tar.gz) = b782339fc7a38fe17689cb39966c4d821236c28018b6593ddb6fd59ee40786a8 +SIZE (gsl-2.6.tar.gz) = 7398548 diff --git a/math/gsl/pkg-plist b/math/gsl/pkg-plist index de5c97ccdbce..507c6fd2ee47 100644 --- a/math/gsl/pkg-plist +++ b/math/gsl/pkg-plist @@ -19,6 +19,10 @@ include/gsl/gsl_block_uint.h include/gsl/gsl_block_ulong.h include/gsl/gsl_block_ushort.h include/gsl/gsl_bspline.h +include/gsl/gsl_bst.h +include/gsl/gsl_bst_avl.h +include/gsl/gsl_bst_rb.h +include/gsl/gsl_bst_types.h include/gsl/gsl_cblas.h include/gsl/gsl_cdf.h include/gsl/gsl_chebyshev.h @@ -213,6 +217,20 @@ include/gsl/gsl_splinalg.h include/gsl/gsl_spline.h include/gsl/gsl_spline2d.h include/gsl/gsl_spmatrix.h +include/gsl/gsl_spmatrix_char.h +include/gsl/gsl_spmatrix_complex_double.h +include/gsl/gsl_spmatrix_complex_float.h +include/gsl/gsl_spmatrix_complex_long_double.h +include/gsl/gsl_spmatrix_double.h +include/gsl/gsl_spmatrix_float.h +include/gsl/gsl_spmatrix_int.h +include/gsl/gsl_spmatrix_long.h +include/gsl/gsl_spmatrix_long_double.h +include/gsl/gsl_spmatrix_short.h +include/gsl/gsl_spmatrix_uchar.h +include/gsl/gsl_spmatrix_uint.h +include/gsl/gsl_spmatrix_ulong.h +include/gsl/gsl_spmatrix_ushort.h include/gsl/gsl_statistics.h include/gsl/gsl_statistics_char.h include/gsl/gsl_statistics_double.h @@ -250,8 +268,8 @@ include/gsl/gsl_wavelet.h include/gsl/gsl_wavelet2d.h lib/libgsl.a lib/libgsl.so -lib/libgsl.so.23 -lib/libgsl.so.23.1.0 +lib/libgsl.so.25 +lib/libgsl.so.25.0.0 lib/libgslcblas.a lib/libgslcblas.so lib/libgslcblas.so.0 diff --git a/math/p5-Math-GSL/Makefile b/math/p5-Math-GSL/Makefile index 4bfaec297e2e..b27ede1aa8a9 100644 --- a/math/p5-Math-GSL/Makefile +++ b/math/p5-Math-GSL/Makefile @@ -23,6 +23,8 @@ TEST_DEPENDS= p5-Test-Class>=0.12:devel/p5-Test-Class \ USES= perl5 USE_PERL5= modbuild +BROKEN= Does not work with gsl-2.6 + post-install: ${FIND} ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/GSL/ -name "*.so" -exec ${STRIP_CMD} {} +