Building ssaha-3.1c_2.txz (origin /buildshare/ports/355755/biology/ssaha) for powerpc-10-0 on XXX slot1: created x distfiles/ x distfiles/ssaha_v31c.tar.gz x packages/ x packages/bison-2.7.1,1.txz x packages/gmake-3.82_1.txz x packages/gmp-5.1.3_2.txz x packages/m4-1.4.17_1,1.txz x packages/mpfr-3.1.2_2.txz x packages/mpc-1.0.2.txz x packages/gcc-4.7.3_1.txz x packages/binutils-2.24.txz x packages/perl5-5.16.3_10.txz x packages/pkg-1.2.7_2.txz x packages/gettext-0.18.3.1_1.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> ssaha-3.1c_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of ssaha-3.1c_2 ===> ssaha-3.1c_2 depends on executable: gmake - not found ===> Verifying install for gmake in /buildshare/ports/355755/devel/gmake ===> Installing existing package /packages/gmake-3.82_1.txz Installing gmake-3.82_1...Installing gettext-0.18.3.1_1... done done ===> Returning to build of ssaha-3.1c_2 Make install ===> ssaha-3.1c_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by ssaha-3.1c_2 for building ===> Extracting for ssaha-3.1c_2 => SHA256 Checksum OK for ssaha_v31c.tar.gz. ===> Patching for ssaha-3.1c_2 ===> Applying FreeBSD patches for ssaha-3.1c_2 ===> ssaha-3.1c_2 depends on executable: gmake - found ===> Configuring for ssaha-3.1c_2 ===> Building for ssaha-3.1c_2 gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/ssaha/work/Binary' g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global/GlobalDefinitions.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable/HashTable.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable/HashTablePacked.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable/HashTableGeneric.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable/HashTableTranslated.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReader.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceEncoder.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderMulti.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFasta.cpp In file included from /usr/include/c++/4.2/backward/strstream:51, from /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFasta.cpp:36: /usr/include/c++/4.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFastq.cpp In file included from /usr/include/c++/4.2/backward/strstream:51, from /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFastq.cpp:36: /usr/include/c++/4.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFilter.cpp In file included from /usr/include/c++/4.2/backward/strstream:51, from /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader/SequenceReaderFilter.cpp:34: /usr/include/c++/4.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the header for the header for C++ includes, or instead of the deprecated header . To disable this warning use -Wno-deprecated. g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager/QueryManager.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager/MatchStoreUngapped.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager/MatchStoreGapped.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager/MatchStore.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager/MatchAligner.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global/SSAHAMain.cpp g++ -c -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT /obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global/TimeStamp.cpp g++ -O2 -pipe -fno-strict-aliasing -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/../ -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//Global -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//SequenceReader -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//HashTable -I/obj/buildshare/ports/355755/biology/ssaha/work/Binary/..//QueryManager -D_REENTRANT -Wl,-S -o ssaha GlobalDefinitions.o HashTable.o HashTablePacked.o HashTableGeneric.o HashTableTranslated.o SequenceReader.o SequenceEncoder.o SequenceReaderMulti.o SequenceReaderFasta.o SequenceReaderFastq.o SequenceReaderFilter.o QueryManager.o MatchStoreUngapped.o MatchStoreGapped.o MatchStore.o MatchAligner.o SSAHAMain.o TimeStamp.o gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/ssaha/work/Binary' ===> Staging for ssaha-3.1c_2 ===> Generating temporary packing list (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -s -o root -g wheel -m 555 ssaha /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/bin) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 555 testSSAHA.csh /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 test.fasta /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 test_extract.fasta /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 test_filter.fail /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 test_filter.fastq /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 test_protein.fasta /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) (cd /obj/buildshare/ports/355755/biology/ssaha/work/Binary && install -o root -g wheel -m 444 README /obj/buildshare/ports/355755/biology/ssaha/work/stage/usr/local/share/ssaha) ====> Compressing man pages (compress-man) ===> Installing for ssaha-3.1c_2 ===> Checking if biology/ssaha already installed ===> Registering installation for ssaha-3.1c_2 Installing ssaha-3.1c_2... done Make package ===> Building package for ssaha-3.1c_2 slot1: removed