Building phylip-3.695_3,1.txz (origin /buildshare/ports/355755/biology/phylip) for powerpc-10-0 on XXX
slot1: created
x distfiles/
x distfiles/phylip-3.695.tar.gz
x packages/
x packages/libxml2-2.9.1_1.txz
x packages/perl5-5.16.3_10.txz
x packages/bison-2.7.1,1.txz
x packages/libgpg-error-1.13.txz
x packages/libICE-1.0.8_2,1.txz
x packages/libSM-1.2.2_2,1.txz
x packages/python27-2.7.6_4.txz
x packages/libpthread-stubs-0.3_4.txz
x packages/pkg-1.2.7_2.txz
x packages/m4-1.4.17_1,1.txz
x packages/pkgconf-0.9.5.txz
x packages/libXdmcp-1.1.1_2.txz
x packages/gettext-0.18.3.1_1.txz
x packages/libxslt-1.1.28_3.txz
x packages/libXp-1.0.2_2,1.txz
x packages/xextproto-7.3.0.txz
x packages/libXpm-3.5.11_2.txz
x packages/libXext-1.3.2_2,1.txz
x packages/xf86bigfontproto-1.2.0.txz
x packages/libXt-1.1.4_2,1.txz
x packages/printproto-1.0.5.txz
x packages/libXau-1.0.8_2.txz
x packages/xorg-macros-1.19.0.txz
x packages/xcb-proto-1.10_1.txz
x packages/kbproto-1.0.6.txz
x packages/xtrans-1.3.4_1.txz
x packages/python2-2_2.txz
x packages/libgcrypt-1.5.3_2.txz
x packages/libxcb-1.10_2.txz
x packages/xcmiscproto-1.2.2.txz
x packages/libXmu-1.1.2_2,1.txz
x packages/libX11-1.6.2_2,1.txz
x packages/xproto-7.0.25.txz
x packages/libcheck-0.9.12.txz
x packages/bash-4.3.18_2.txz
x packages/bigreqsproto-1.1.2.txz
x packages/inputproto-2.3.txz
x packages/libXaw-1.0.12_2,2.txz
x packages/gmake-3.82_1.txz
x packages/libtool-2.4.2_3.txz
ELF ldconfig path: /lib /usr/lib /usr/lib/compat
Make depends
===>   phylip-3.695_3,1 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg
===>   Installing existing package /packages/pkg-1.2.7_2.txz
Installing pkg-1.2.7_2... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on executable: bash - not found
===>    Verifying install for bash in /buildshare/ports/355755/shells/bash
===>   Installing existing package /packages/bash-4.3.18_2.txz
Installing bash-4.3.18_2...Installing gettext-0.18.3.1_1... done
Updating /etc/shells
 done
======================================================================

bash requires fdescfs(5) mounted on /dev/fd

If you have not done it yet, please do the following:

	mount -t fdescfs fdesc /dev/fd

To make it permanent, you need the following lines in /etc/fstab:

	fdesc	/dev/fd		fdescfs		rw	0	0

======================================================================
===>   Returning to build of phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on executable: gmake - not found
===>    Verifying install for gmake in /buildshare/ports/355755/devel/gmake
===>   Installing existing package /packages/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===>   Returning to build of phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/x11.pc in /buildshare/ports/355755/x11/libX11
===>   Installing existing package /packages/libX11-1.6.2_2,1.txz
Installing libX11-1.6.2_2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8_2...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1_2... done
Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_4... done
Installing libxml2-2.9.1_1... done
 done
 done
===>   Returning to build of phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xaw7.pc in /buildshare/ports/355755/x11-toolkits/libXaw
===>   Installing existing package /packages/libXaw-1.0.12_2,2.txz
Installing libXaw-1.0.12_2,2...Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done
 done
Installing libXmu-1.1.2_2,1...Installing libXt-1.1.4_2,1...Installing libSM-1.2.2_2,1...Installing libICE-1.0.8_2,1... done
 done
 done
 done
Installing libXp-1.0.2_2,1...Installing printproto-1.0.5... done
 done
Installing libXpm-3.5.11_2... done
 done
===>   Returning to build of phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
Make install
===>   phylip-3.695_3,1 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by phylip-3.695_3,1 for building
===>  Extracting for phylip-3.695_3,1
=> SHA256 Checksum OK for phylip-3.695.tar.gz.
===>  Patching for phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on executable: bash - found
===>   phylip-3.695_3,1 depends on executable: gmake - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
===>  Configuring for phylip-3.695_3,1
===>  Building for phylip-3.695_3,1
gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/phylip/work/phylip-3.695/src'
Building PHYLIP version 3.695
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o clique.o clique.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o disc.o disc.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o phylip.o phylip.c
cc -O2 -pipe -fno-strict-aliasing -DUNX clique.o disc.o phylip.o -lm -o clique
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o consense.o consense.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o cons.o cons.c
cc -O2 -pipe -fno-strict-aliasing -DUNX consense.o phylip.o cons.o -lm -o consense
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o contml.o contml.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o cont.o cont.c
cc -O2 -pipe -fno-strict-aliasing -DUNX contml.o cont.o phylip.o -lm -o contml
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o contrast.o contrast.c
cc -O2 -pipe -fno-strict-aliasing -DUNX contrast.o cont.o phylip.o -lm -o contrast
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnacomp.o dnacomp.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o seq.o seq.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnacomp.o seq.o phylip.o -lm -o dnacomp
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnadist.o dnadist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnadist.o seq.o phylip.o -lm -o dnadist
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnainvar.o dnainvar.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnainvar.o seq.o phylip.o -lm -o dnainvar
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnaml.o dnaml.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnaml.o seq.o phylip.o -lm -o dnaml
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnamlk.o dnamlk.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o mlclock.o mlclock.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o printree.o printree.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnamove.o dnamove.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o moves.o moves.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnamove.o seq.o moves.o phylip.o -lm -o dnamove
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnapars.o dnapars.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnapars.o seq.o phylip.o -lm -o dnapars
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dnapenny.o dnapenny.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dnapenny.o seq.o phylip.o -lm -o dnapenny
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dolmove.o dolmove.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dollo.o dollo.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dollop.o dollop.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dollop.o disc.o dollo.o phylip.o -lm -o dollop
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dolpenny.o dolpenny.c
cc -O2 -pipe -fno-strict-aliasing -DUNX dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o factor.o factor.c
cc -O2 -pipe -fno-strict-aliasing -DUNX factor.o phylip.o -lm -o factor
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o fitch.o fitch.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o dist.o dist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX fitch.o dist.o phylip.o -lm -o fitch
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o gendist.o gendist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX gendist.o phylip.o -lm -o gendist
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o kitsch.o kitsch.c
cc -O2 -pipe -fno-strict-aliasing -DUNX kitsch.o dist.o phylip.o -lm -o kitsch
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o mix.o mix.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o wagner.o wagner.c
cc -O2 -pipe -fno-strict-aliasing -DUNX mix.o disc.o wagner.o phylip.o -lm -o mix
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o move.o move.c
cc -O2 -pipe -fno-strict-aliasing -DUNX move.o disc.o moves.o wagner.o phylip.o -lm -o move
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o neighbor.o neighbor.c
cc -O2 -pipe -fno-strict-aliasing -DUNX neighbor.o dist.o phylip.o -lm -o neighbor
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o pars.o pars.c
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o discrete.o discrete.c
cc -O2 -pipe -fno-strict-aliasing -DUNX pars.o discrete.o phylip.o -lm -o pars
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o penny.o penny.c
cc -O2 -pipe -fno-strict-aliasing -DUNX penny.o disc.o wagner.o  phylip.o -lm -o penny
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o proml.o proml.c
cc -O2 -pipe -fno-strict-aliasing -DUNX proml.o seq.o phylip.o -lm -o proml
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o promlk.o promlk.c
cc -O2 -pipe -fno-strict-aliasing -DUNX promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o protdist.o protdist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX protdist.o seq.o phylip.o -lm -o protdist
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o protpars.o protpars.c
cc -O2 -pipe -fno-strict-aliasing -DUNX protpars.o seq.o phylip.o -lm -o protpars
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o restdist.o restdist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX restdist.o seq.o phylip.o -lm -o restdist
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o restml.o restml.c
cc -O2 -pipe -fno-strict-aliasing -DUNX restml.o seq.o phylip.o -lm -o restml
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o retree.o retree.c
cc -O2 -pipe -fno-strict-aliasing -DUNX retree.o moves.o phylip.o -lm -o retree
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o seqboot.o seqboot.c
cc -O2 -pipe -fno-strict-aliasing -DUNX seqboot.o seq.o phylip.o -lm -o seqboot
cc -O2 -pipe -fno-strict-aliasing -DUNX   -c -o treedist.o treedist.c
cc -O2 -pipe -fno-strict-aliasing -DUNX treedist.o cons.o phylip.o -lm -o treedist
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include -c drawgram.c
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include -c draw.c
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include -c draw2.c
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawgram.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawgram
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include  -shared -fPIC -c drawtree.c
cc -O2 -pipe -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawtree.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawtree
cc -O2 -pipe -fno-strict-aliasing -DUNX -o libdrawgram.so -shared -fPIC drawgram.c draw.c draw2.c phylip.c 
cc -O2 -pipe -fno-strict-aliasing -DUNX -o libdrawtree.so  -shared -fPIC drawtree.c draw.c draw2.c phylip.c 
Finished compiling.

gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/phylip/work/phylip-3.695/src'
===>  Staging for phylip-3.695_3,1
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found
===>   phylip-3.695_3,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
===>   Generating temporary packing list
gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/phylip/work/phylip-3.695/src'
Building PHYLIP version 3.695
Finished compiling.

Installing PHYLIP v3.695 binaries in ../exe
Installing dynamic libraries in ../exe
Installing jar files in ../exe
Installing font files in ../exe
Copying testdata files to ../exe/testdata/...
mkdir ../exe/testdata
for i in clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dollop dolmove dolpenny drawgram drawtree factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot  treedist; do \
      	  mkdir ../exe/testdata/$i; \
      	  cp testdata/$i/*.txt ../exe/testdata/$i; \
    	done
Finished installation.

Removing object files to save space
Finished removing object files.  Now will remove
executable files from the current directory, but not from the
executables directory.  (If some are not here, the makefile
will terminate with an error message but this is not a problem)

Removing executables from this directory
Finished cleanup.

Done.

gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/phylip/work/phylip-3.695/src'
====> Compressing man pages (compress-man)
===>  Installing for phylip-3.695_3,1
===>  Checking if biology/phylip already installed
===>   Registering installation for phylip-3.695_3,1
Installing phylip-3.695_3,1... done
Make package
===>  Building package for phylip-3.695_3,1
slot1: removed