Building paml-4.8.txz (origin /buildshare/ports/355755/biology/paml) for powerpc-10-0 on XXX slot2: created x distfiles/ x distfiles/paml4.8.tgz x packages/ x packages/gmake-3.82_1.txz x packages/gettext-0.18.3.1_1.txz x packages/pkg-1.2.7_2.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> paml-4.8 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of paml-4.8 ===> paml-4.8 depends on executable: gmake - not found ===> Verifying install for gmake in /buildshare/ports/355755/devel/gmake ===> Installing existing package /packages/gmake-3.82_1.txz Installing gmake-3.82_1...Installing gettext-0.18.3.1_1... done done ===> Returning to build of paml-4.8 Make install ===> paml-4.8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by paml-4.8 for building ===> Extracting for paml-4.8 => SHA256 Checksum OK for paml4.8.tgz. ===> Patching for paml-4.8 ===> paml-4.8 depends on executable: gmake - found ===> Configuring for paml-4.8 ===> Building for paml-4.8 gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/paml/work/paml4.8/src' cc -O2 -pipe -fno-strict-aliasing -o baseml baseml.c tools.c -lm In file included from baseml.c:129: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o codeml codeml.c tools.c -lm In file included from codeml.c:231: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type codeml.c: In function 'GetAASiteSpecies': codeml.c:5106: warning: comparison is always false due to limited range of data type codeml.c:5108: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o basemlg basemlg.c tools.c -lm In file included from basemlg.c:80: treesub.c: In function 'ReadSeq': treesub.c:516: warning: passing argument 2 of 'printsma' from incompatible pointer type treesub.c:524: warning: passing argument 2 of 'printsma' from incompatible pointer type treesub.c: In function 'printPatterns': treesub.c:736: warning: passing argument 2 of 'printsma' from incompatible pointer type treesub.c: In function 'AllPatterns': treesub.c:966: warning: passing argument 2 of 'printsma' from incompatible pointer type treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o mcmctree mcmctree.c tools.c -lm In file included from mcmctree.c:188: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm In file included from mcmctree.c:188: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o pamp pamp.c tools.c -lm In file included from pamp.c:66: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o evolver evolver.c tools.c -lm In file included from evolver.c:63: treesub.c: In function 'ReadTreeN': treesub.c:2708: warning: comparison is always false due to limited range of data type tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o yn00 yn00.c tools.c -lm tools.c: In function 'rndu': tools.c:1337: warning: this decimal constant is unsigned only in ISO C90 cc -O2 -pipe -fno-strict-aliasing -o chi2 chi2.c -lm gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/paml/work/paml4.8/src' ===> Staging for paml-4.8 ===> Generating temporary packing list install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/baseml /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/basemlg /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/chi2 /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/codeml /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/evolver /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/pamp /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/src/yn00 /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/bin install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/doc/pamlDOC.pdf /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/share/doc/paml install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/doc/pamlFAQs.pdf /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/share/doc/paml install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/paml/work/paml4.8/doc/pamlHistory.txt /obj/buildshare/ports/355755/biology/paml/work/stage/usr/local/share/doc/paml ====> Compressing man pages (compress-man) ===> Installing for paml-4.8 ===> Checking if biology/paml already installed ===> Registering installation for paml-4.8 Installing paml-4.8... done Make package ===> Building package for paml-4.8 slot2: removed