Building migrate-3.5.1.txz (origin /buildshare/ports/355755/biology/migrate) for powerpc-10-0 on XXX slot1: created x distfiles/ x distfiles/migrate-3.5.1.src.tar.gz x packages/ x packages/pkg-1.2.7_2.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> migrate-3.5.1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of migrate-3.5.1 Make install ===> migrate-3.5.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by migrate-3.5.1 for building ===> Extracting for migrate-3.5.1 => SHA256 Checksum OK for migrate-3.5.1.src.tar.gz. ===> Patching for migrate-3.5.1 ===> Applying FreeBSD patches for migrate-3.5.1 ===> Configuring for migrate-3.5.1 ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/haru/configure ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/zlib/configure ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/configure configure: loading site script /buildshare/ports/355755/Templates/config.site checking build system type... powerpc-portbld-freebsd11.0 checking host system type... powerpc-portbld-freebsd11.0 checking target system type... powerpc-portbld-freebsd11.0 ./configure: USERFLAGS+=-O2: not found checking for gmake... (cached) make ======================================================================= Migrate subversion: Hardware: portbld System OS: freebsd11.0 FreeBSD System CPU: powerpc ----------------------------------------------------------------------- checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes ./configure: CFLAGS+=: not found C-compiler: cc C++-compiler:c++ CFLAGS: -O2 -pipe -fno-strict-aliasing ======================================================================= checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking for pthread_create in -pthread... yes checking for MPI_Init in -lmpi... no checking for exp in -lm... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for strings.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for int... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for inline... inline checking return type of signal handlers... void checking for strftime... (cached) yes checking for strcspn... (cached) yes checking for strsep... (cached) yes checking for lgamma... yes checking which zlib implementation to use... autodetect checking for main in -lz... yes checking for gzbuffer... no configure: creating ./config.status config.status: creating Makefile config.status: creating conf.h config.status: conf.h is unchanged MIGRATE-N is now setup to compile the program you need to type one of the commands below (ordered by preference): SINGLE CPU machines make # with PDF output support # this might fail on first attempt, # if the make fails, please let me know # often linking fails because the C++ pdf library # and the core migrate parts (C) mismatch # check the Makefile line for STDLIB= -lstdc++ SMP machines more than 1 CPU in machine make thread # uses the thread library if present make # on macs running macos 10.6+ using GrandCentral PARALLEL Computers, Clusters with MPI software make mpis # each cpu-core can be treated as a node make mpis-thread # experimental, may increase load per node! ------------------------------------------------------------------------ SPEED and other TESTING the migrate website contains a testsuite.tar.gz that has many tests for single, parallel and thread compilations the tests are driven by a python script rt (see the README in the testsuite) and a submit script that allows to streamline submissions to a batch queue system, currently supported systems are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE ------------------------------------------------------------------------ In case there are problems with the compile send a message to the migrate-support@google.com usergroup, include a log of ./configure make ======================================================================= ===> Building for migrate-3.5.1 (cd ./haru ; make -f makefile.gcc "CC=c++" "CPP=cc" "ARCH=powerpc" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ") cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfExceptions.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfList.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUtils.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfStreams.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAutoPtrObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfContents.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPages.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXref.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDestinations.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfOutlines.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfBorderStyle.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAnnotations.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDoc.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCatalog.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfInfo.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXObjects.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Courier.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Helvetica.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Times.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Symbol.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_ZapfDingbats.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_ISO8859.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_KOI8.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_MSCP.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUnicodeText.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Gothic.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Mincyo.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimHei.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimSun.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Ming.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Batang.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Dotum.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_RKSJ.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_GB_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_ETen_B5.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSCms_UHC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSC_EUC.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPngImage.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfJpegImage.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncrypt.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_jpfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_krfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cnsfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cntfonts.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_png.cc cc: -lstdc++: linker input file unused because linking not done cc -I. -DNDEBUG -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_jpeg.cc cc: -lstdc++: linker input file unused because linking not done ar rc libharu.a PdfExceptions.o PdfList.o PdfUtils.o PdfStreams.o PdfAutoPtrObjects.o PdfObjects.o PdfContents.o PdfPages.o PdfFonts.o PdfXref.o PdfDestinations.o PdfOutlines.o PdfBorderStyle.o PdfAnnotations.o PdfDoc.o PdfCatalog.o PdfInfo.o PdfEncoding.o PdfFontDef.o PdfXObjects.o PdfFontDef_Courier.o PdfFontDef_Helvetica.o PdfFontDef_Times.o PdfFontDef_Symbol.o PdfFontDef_ZapfDingbats.o PdfEncoding_ISO8859.o PdfEncoding_KOI8.o PdfEncoding_MSCP.o PdfMbFonts.o PdfCMap.o PdfUnicodeText.o PdfMbFontDef_Gothic.o PdfMbFontDef_Mincyo.o PdfMbFontDef_SimHei.o PdfMbFontDef_SimSun.o PdfMbFontDef_Ming.o PdfMbFontDef_Batang.o PdfMbFontDef_Dotum.o PdfCMap_RKSJ.o PdfCMap_EUC.o PdfCMap_GB_EUC.o PdfCMap_ETen_B5.o PdfCMap_KSCms_UHC.o PdfCMap_KSC_EUC.o PdfPngImage.o PdfJpegImage.o PdfEncrypt.o libharuc.o libharuc_jpfonts.o libharuc_krfonts.o libharuc_cnsfonts.o libharuc_cntfonts.o libharu_png.o libharu_jpeg.o ranlib libharu.a Using system zlib architecture /usr/bin/make migrate-n "CFLAGS = -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION=\"\\\"\\\"\" -DMIGRATEVERSION=\"\\\"3.5.1\\\"\" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++" "LIBS = -Lharu -lharu -lz -lm" "LDFLAGS = " cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c aic.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c altivec.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c autotune.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c bayes.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c broyden.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c calculator.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c combroyden2.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c data.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c correlation.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c gammalike.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c fst.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c heating.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c histogram.c histogram.c: In function 'read_from_bayesmdim_minimal_info': histogram.c:58: warning: comparison is always true due to limited range of data type histogram.c: In function 'read_bayes_fromfile': histogram.c:242: warning: comparison is always true due to limited range of data type cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c inthp.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c joint-chains.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c laguerre.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c lrt.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c main.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c migrate_mpi.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mutationmodel.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mcmc1.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mcmc2.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c menu.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c migevents.c migevents.c: In function 'read_event_values_fromfile': migevents.c:487: warning: comparison is always true due to limited range of data type cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c options.c options.c: In function 'read_options_master': options.c:483: warning: comparison is always true due to limited range of data type cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c priors.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c profile.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c random.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c reporter.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c spline.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c tools.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c tree.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sequence.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sighandler.c sighandler.c: In function 'myznzfgets': sighandler.c:315: warning: comparison is always false due to limited range of data type sighandler.c:325: warning: comparison is always false due to limited range of data type sighandler.c: In function 'myfgets': sighandler.c:352: warning: comparison is always false due to limited range of data type sighandler.c:363: warning: comparison is always false due to limited range of data type sighandler.c: In function 'myfgetssafe': sighandler.c:392: warning: comparison is always false due to limited range of data type sighandler.c:408: warning: comparison is always false due to limited range of data type cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c slice.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sort.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c uep.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c world.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c pretty.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c skyline.c skyline.c: In function 'read_expected_values_fromfile': skyline.c:456: warning: comparison is always true due to limited range of data type cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c watterson.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c znzlib.c cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c pretty-win32.cpp cc: -lstdc++: linker input file unused because linking not done cc -O2 -pipe -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.5.1\"" -O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -o migrate-n aic.o altivec.o autotune.o bayes.o broyden.o calculator.o combroyden2.o data.o correlation.o gammalike.o fst.o heating.o histogram.o inthp.o joint-chains.o laguerre.o lrt.o main.o migrate_mpi.o mutationmodel.o mcmc1.o mcmc2.o menu.o migevents.o options.o priors.o profile.o random.o reporter.o spline.o tools.o tree.o sequence.o sighandler.o slice.o sort.o uep.o world.o pretty.o skyline.o watterson.o znzlib.o pretty-win32.o -Lharu -lharu -lz -lm ; ===> Staging for migrate-3.5.1 ===> Generating temporary packing list install -s -o root -g wheel -m 555 /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/migrate-n /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/bin /bin/ln -sf migrate-n /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/bin/migrate install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/migrate.1 /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/man/man1 /bin/ln -sf migrate.1 /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/man/man1/migrate-n.1 install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../HISTORY /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../README /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../README_PARALLEL_GENERAL /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../migrate.html /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/share/doc/migrate install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../graphics/* /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/share/doc/migrate/graphics install -o root -g wheel -m 444 /obj/buildshare/ports/355755/biology/migrate/work/migrate-3.5.1/src/../example/[A-Za-z]* /obj/buildshare/ports/355755/biology/migrate/work/stage/usr/local/share/examples/migrate ====> Compressing man pages (compress-man) ===> Installing for migrate-3.5.1 ===> Checking if biology/migrate already installed ===> Registering installation for migrate-3.5.1 Installing migrate-3.5.1... done Make package ===> Building package for migrate-3.5.1 slot1: removed