Building io_lib-1.13.5.txz (origin /buildshare/ports/355755/biology/iolib) for powerpc-10-0 on XXX slot2: created x distfiles/ x distfiles/io_lib-1.13.5.tar.gz x packages/ x packages/ca_root_nss-3.16.txz x packages/gettext-0.18.3.1_1.txz x packages/libtool-2.4.2_3.txz x packages/perl5-5.16.3_10.txz x packages/curl-7.36.0_1.txz x packages/gmake-3.82_1.txz x packages/pkg-1.2.7_2.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> io_lib-1.13.5 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of io_lib-1.13.5 ===> io_lib-1.13.5 depends on shared library: libcurl.so - not found ===> Verifying for libcurl.so in /buildshare/ports/355755/ftp/curl ===> Installing existing package /packages/curl-7.36.0_1.txz Installing curl-7.36.0_1...Installing ca_root_nss-3.16... done done ===> Returning to build of io_lib-1.13.5 ===> io_lib-1.13.5 depends on executable: gmake - not found ===> Verifying install for gmake in /buildshare/ports/355755/devel/gmake ===> Installing existing package /packages/gmake-3.82_1.txz Installing gmake-3.82_1...Installing gettext-0.18.3.1_1... done done ===> Returning to build of io_lib-1.13.5 ===> io_lib-1.13.5 depends on package: libtool>=2.4 - not found ===> Verifying install for libtool>=2.4 in /buildshare/ports/355755/devel/libtool ===> Installing existing package /packages/libtool-2.4.2_3.txz Installing libtool-2.4.2_3... done ===> Returning to build of io_lib-1.13.5 Make install ===> License BSD3CLAUSE accepted by the user ===> io_lib-1.13.5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by io_lib-1.13.5 for building ===> Extracting for io_lib-1.13.5 => SHA256 Checksum OK for io_lib-1.13.5.tar.gz. ===> Patching for io_lib-1.13.5 ===> Applying FreeBSD patches for io_lib-1.13.5 ===> io_lib-1.13.5 depends on executable: gmake - found ===> io_lib-1.13.5 depends on package: libtool>=2.4 - found ===> io_lib-1.13.5 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so.7) ===> Configuring for io_lib-1.13.5 ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/configure configure: loading site script /buildshare/ports/355755/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking build system type... powerpc-portbld-freebsd11.0 checking host system type... powerpc-portbld-freebsd11.0 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert powerpc-portbld-freebsd11.0 file names to powerpc-portbld-freebsd11.0 format... func_convert_file_noop checking how to convert powerpc-portbld-freebsd11.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) /usr/bin/awk checking for curl-config... /usr/local/bin/curl-config checking for the version of libcurl... 7.36.0 checking whether libcurl just needs -lcurl... no checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking whether byte ordering is bigendian... yes checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... (cached) yes checking for fcntl.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) yes checking size of short... 2 checking size of int... 4 checking size of long... 4 checking for inline... inline checking for mode_t... (cached) yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing pthread_join... none required checking for library containing cos... -lm checking for strdup... (cached) yes checking for fsync... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands ===> Building for io_lib-1.13.5 gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake all-recursive gmake[2]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' Making all in io_lib gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-Read.lo -MD -MP -MF .deps/libstaden_read_la-Read.Tpo -c -o libstaden_read_la-Read.lo `test 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-DPIC -o .libs/libstaden_read_la-translate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-translate.lo -MD -MP -MF .deps/libstaden_read_la-translate.Tpo -c translate.c -o libstaden_read_la-translate.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-translate.Tpo .deps/libstaden_read_la-translate.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-compression.lo -MD -MP -MF .deps/libstaden_read_la-compression.Tpo -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-compression.lo -MD -MP -MF .deps/libstaden_read_la-compression.Tpo -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-compression.lo -MD -MP -MF .deps/libstaden_read_la-compression.Tpo -c compression.c -o libstaden_read_la-compression.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-compression.Tpo .deps/libstaden_read_la-compression.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr.lo -MD -MP -MF .deps/libstaden_read_la-ztr.Tpo -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr.lo -MD -MP -MF .deps/libstaden_read_la-ztr.Tpo -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr.lo -MD -MP -MF .deps/libstaden_read_la-ztr.Tpo -c ztr.c -o libstaden_read_la-ztr.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-ztr.Tpo .deps/libstaden_read_la-ztr.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr_translate.lo -MD -MP -MF .deps/libstaden_read_la-ztr_translate.Tpo -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr_translate.lo -MD -MP -MF .deps/libstaden_read_la-ztr_translate.Tpo -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-ztr_translate.lo -MD -MP -MF .deps/libstaden_read_la-ztr_translate.Tpo -c ztr_translate.c -o libstaden_read_la-ztr_translate.o >/dev/null 2>&1 mv -f 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-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-seqIOABI.lo -MD -MP -MF .deps/libstaden_read_la-seqIOABI.Tpo -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-seqIOABI.lo -MD -MP -MF .deps/libstaden_read_la-seqIOABI.Tpo -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-seqIOABI.lo -MD -MP -MF .deps/libstaden_read_la-seqIOABI.Tpo -c seqIOABI.c -o libstaden_read_la-seqIOABI.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-seqIOABI.Tpo .deps/libstaden_read_la-seqIOABI.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-seqIOALF.lo -MD -MP -MF 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libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-expFileIO.lo -MD -MP -MF .deps/libstaden_read_la-expFileIO.Tpo -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-expFileIO.lo -MD -MP -MF .deps/libstaden_read_la-expFileIO.Tpo -c expFileIO.c -o libstaden_read_la-expFileIO.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-expFileIO.Tpo .deps/libstaden_read_la-expFileIO.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-seqIOPlain.lo -MD -MP -MF .deps/libstaden_read_la-seqIOPlain.Tpo -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT 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.deps/libstaden_read_la-scram.Tpo -c scram.c -fPIC -DPIC -o .libs/libstaden_read_la-scram.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-scram.Tpo .deps/libstaden_read_la-scram.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -O2 -pipe -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-thread_pool.Tpo .deps/libstaden_read_la-thread_pool.Plo /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -version-info 5:1:4 -o libstaden-read.la -rpath /usr/local/lib libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-arith_static.lo libstaden_read_la-rANS_static.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo -lz -L/usr/local/lib -lcurl -lssl -lcrypto -L/usr/lib -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -pthread -lz -lm -lbz2 libtool: link: cc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-arith_static.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -O2 -pthread -pthread -Wl,-soname -Wl,libstaden-read.so.5 -o .libs/libstaden-read.so.5 libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.5" "libstaden-read.so") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.5" "libstaden-read.so") libtool: link: ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-arith_static.o libstaden_read_la-rANS_static.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libtool: link: ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' Making all in progs gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT convert_trace.o -MD -MP -MF .deps/convert_trace.Tpo -c -o convert_trace.o convert_trace.c mv -f .deps/convert_trace.Tpo .deps/convert_trace.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT makeSCF.o -MD -MP -MF .deps/makeSCF.Tpo -c -o makeSCF.o makeSCF.c mv -f .deps/makeSCF.Tpo .deps/makeSCF.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT extract_seq.o -MD -MP -MF .deps/extract_seq.Tpo -c -o extract_seq.o extract_seq.c mv -f .deps/extract_seq.Tpo .deps/extract_seq.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT extract_qual.o -MD -MP -MF .deps/extract_qual.Tpo -c -o extract_qual.o extract_qual.c mv -f .deps/extract_qual.Tpo .deps/extract_qual.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT extract_fastq.o -MD -MP -MF .deps/extract_fastq.Tpo -c -o extract_fastq.o extract_fastq.c mv -f .deps/extract_fastq.Tpo .deps/extract_fastq.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT index_tar.o -MD -MP -MF .deps/index_tar.Tpo -c -o index_tar.o index_tar.c mv -f .deps/index_tar.Tpo .deps/index_tar.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o index_tar index_tar.o -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o index_tar index_tar.o -lm -lbz2 cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scf_dump.o -MD -MP -MF .deps/scf_dump.Tpo -c -o scf_dump.o scf_dump.c mv -f .deps/scf_dump.Tpo .deps/scf_dump.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scf_info.o -MD -MP -MF .deps/scf_info.Tpo -c -o scf_info.o scf_info.c mv -f .deps/scf_info.Tpo .deps/scf_info.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scf_update.o -MD -MP -MF .deps/scf_update.Tpo -c -o scf_update.o scf_update.c mv -f .deps/scf_update.Tpo .deps/scf_update.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT get_comment.o -MD -MP -MF .deps/get_comment.Tpo -c -o get_comment.o get_comment.c mv -f .deps/get_comment.Tpo .deps/get_comment.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT hash_tar.o -MD -MP -MF .deps/hash_tar.Tpo -c -o hash_tar.o hash_tar.c mv -f .deps/hash_tar.Tpo .deps/hash_tar.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT hash_extract.o -MD -MP -MF .deps/hash_extract.Tpo -c -o hash_extract.o hash_extract.c mv -f .deps/hash_extract.Tpo .deps/hash_extract.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT hash_list.o -MD -MP -MF .deps/hash_list.Tpo -c -o hash_list.o hash_list.c mv -f .deps/hash_list.Tpo .deps/hash_list.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT trace_dump.o -MD -MP -MF .deps/trace_dump.Tpo -c -o trace_dump.o trace_dump.c mv -f .deps/trace_dump.Tpo .deps/trace_dump.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT hash_sff.o -MD -MP -MF .deps/hash_sff.Tpo -c -o hash_sff.o hash_sff.c mv -f .deps/hash_sff.Tpo .deps/hash_sff.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT append_sff.o -MD -MP -MF .deps/append_sff.Tpo -c -o append_sff.o append_sff.c mv -f .deps/append_sff.Tpo .deps/append_sff.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT ztr_dump.o -MD -MP -MF .deps/ztr_dump.Tpo -c -o ztr_dump.o ztr_dump.c mv -f .deps/ztr_dump.Tpo .deps/ztr_dump.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_dump_all.o -MD -MP -MF .deps/srf_dump_all.Tpo -c -o srf_dump_all.o srf_dump_all.c mv -f .deps/srf_dump_all.Tpo .deps/srf_dump_all.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_index_hash.o -MD -MP -MF .deps/srf_index_hash.Tpo -c -o srf_index_hash.o srf_index_hash.c mv -f .deps/srf_index_hash.Tpo .deps/srf_index_hash.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_extract_linear.o -MD -MP -MF .deps/srf_extract_linear.Tpo -c -o srf_extract_linear.o srf_extract_linear.c mv -f .deps/srf_extract_linear.Tpo .deps/srf_extract_linear.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_extract_hash.o -MD -MP -MF .deps/srf_extract_hash.Tpo -c -o srf_extract_hash.o srf_extract_hash.c mv -f .deps/srf_extract_hash.Tpo .deps/srf_extract_hash.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf2fastq.o -MD -MP -MF .deps/srf2fastq.Tpo -c -o srf2fastq.o srf2fastq.c srf2fastq.c: In function 'getQual': srf2fastq.c:135: warning: comparison is always false due to limited range of data type mv -f .deps/srf2fastq.Tpo .deps/srf2fastq.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf2fasta.o -MD -MP -MF .deps/srf2fasta.Tpo -c -o srf2fasta.o srf2fasta.c mv -f .deps/srf2fasta.Tpo .deps/srf2fasta.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_filter.o -MD -MP -MF .deps/srf_filter.Tpo -c -o srf_filter.o srf_filter.c mv -f .deps/srf_filter.Tpo .deps/srf_filter.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_info.o -MD -MP -MF .deps/srf_info.Tpo -c -o srf_info.o srf_info.c mv -f .deps/srf_info.Tpo .deps/srf_info.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT srf_list.o -MD -MP -MF .deps/srf_list.Tpo -c -o srf_list.o srf_list.c mv -f .deps/srf_list.Tpo .deps/srf_list.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT hash_exp.o -MD -MP -MF .deps/hash_exp.Tpo -c -o hash_exp.o hash_exp.c mv -f .deps/hash_exp.Tpo .deps/hash_exp.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT cram_dump.o -MD -MP -MF .deps/cram_dump.Tpo -c -o cram_dump.o cram_dump.c mv -f .deps/cram_dump.Tpo .deps/cram_dump.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT cram_index.o -MD -MP -MF .deps/cram_index.Tpo -c -o cram_index.o cram_index.c mv -f .deps/cram_index.Tpo .deps/cram_index.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scramble.o -MD -MP -MF .deps/scramble.Tpo -c -o scramble.o scramble.c mv -f .deps/scramble.Tpo .deps/scramble.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scram_merge.o -MD -MP -MF .deps/scram_merge.Tpo -c -o scram_merge.o scram_merge.c mv -f .deps/scram_merge.Tpo .deps/scram_merge.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scram_pileup.o -MD -MP -MF .deps/scram_pileup.Tpo -c -o scram_pileup.o scram_pileup.c mv -f .deps/scram_pileup.Tpo .deps/scram_pileup.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scram_flagstat.o -MD -MP -MF .deps/scram_flagstat.Tpo -c -o scram_flagstat.o scram_flagstat.c mv -f .deps/scram_flagstat.Tpo .deps/scram_flagstat.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lbz2 libtool: link: cc -O2 -pipe -fno-strict-aliasing -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -L/usr/local/lib /usr/local/lib/libcurl.so -L/usr/lib -lssl -lgssapi -lheimntlm -lkrb5 -lhx509 -lcom_err -lcrypto -lasn1 -lwind -lheimbase -lroken -lcrypt -lz -lm -lbz2 -pthread -Wl,-rpath -Wl,/usr/local/lib gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' Making all in tests gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[3]: Nothing to be done for `all-am'. gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[2]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' ===> Staging for io_lib-1.13.5 ===> Generating temporary packing list gmake[1]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' Making install in io_lib gmake[2]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' test -z "/usr/local/lib" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -o root -g wheel libstaden-read.la '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib' libtool: install: /usr/bin/install -c -o root -g wheel .libs/libstaden-read.so.5 /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib/libstaden-read.so.5 libtool: install: (cd /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib && { ln -s -f libstaden-read.so.5 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.5 libstaden-read.so; }; }) libtool: install: (cd /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib && { ln -s -f libstaden-read.so.5 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.5 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c -o root -g wheel .libs/libstaden-read.lai /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib/libstaden-read.la libtool: install: /usr/bin/install -c -o root -g wheel .libs/libstaden-read.a /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib/libstaden-read.a libtool: install: chmod 644 /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib/libstaden-read.a libtool: install: ranlib /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/lib/libstaden-read.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' gmake[3]: Nothing to be done for `install-data-am'. gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' gmake[2]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/io_lib' Making install in progs gmake[2]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' test -z "/usr/local/bin" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin" /bin/sh ../libtool --mode=install install -s -o root -g wheel -m 555 convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/convert_trace /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/convert_trace libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/makeSCF /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/makeSCF libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/extract_seq /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/extract_seq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/extract_qual /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/extract_qual libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/extract_fastq /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/extract_fastq libtool: install: install -o root -g wheel -m 555 -s index_tar /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/index_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scf_dump /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scf_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scf_info /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scf_update /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scf_update libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/get_comment /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/get_comment libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/hash_tar /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/hash_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/hash_extract /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/hash_extract libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/hash_list /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/hash_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/trace_dump /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/trace_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/hash_sff /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/hash_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/append_sff /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/append_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/ztr_dump /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/ztr_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_dump_all /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_dump_all libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_index_hash /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_index_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_extract_linear /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_extract_linear libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_extract_hash /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_extract_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf2fastq /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf2fastq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf2fasta /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf2fasta libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_filter /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_filter libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_info /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/srf_list /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/srf_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/hash_exp /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/hash_exp libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/cram_dump /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/cram_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/cram_index /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/cram_index libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scramble /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scramble libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scram_merge /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scram_merge libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scram_pileup /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scram_pileup libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/local/lib' libtool: install: install -o root -g wheel -m 555 -s .libs/scram_flagstat /obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin/scram_flagstat gmake[3]: Nothing to be done for `install-data-am'. gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' gmake[2]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/progs' Making install in tests gmake[2]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[3]: Nothing to be done for `install-exec-am'. gmake[3]: Nothing to be done for `install-data-am'. gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[2]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5/tests' gmake[2]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[3]: Entering directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' test -z "/usr/local/bin" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin" install -o root -g wheel -m 555 io_lib-config '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/bin' test -z "/usr/local/man/man1" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man1" install -o root -g wheel -m 444 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man1' test -z "/usr/local/man/man3" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man3" install -o root -g wheel -m 444 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man3' test -z "/usr/local/man/man4" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man4" install -o root -g wheel -m 444 man/man4/Read.4 '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/man/man4' test -z "/usr/local/include/io_lib" || /bin/mkdir -p "/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/include/io_lib" install -o root -g wheel -m 444 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/include/io_lib' install -o root -g wheel -m 444 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h '/obj/buildshare/ports/355755/biology/iolib/work/stage/usr/local/include/io_lib' gmake[3]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[2]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' gmake[1]: Leaving directory `/obj/buildshare/ports/355755/biology/iolib/work/io_lib-1.13.5' ====> Compressing man pages (compress-man) ===> Installing for io_lib-1.13.5 ===> Checking if biology/iolib already installed ===> Registering installation for io_lib-1.13.5 Installing io_lib-1.13.5... done Make package ===> Building package for io_lib-1.13.5 slot2: removed