Building gromacs-4.6.5_2.txz (origin /buildshare/ports/355755/science/gromacs) for powerpc-10-0 on XXX slot2: created x distfiles/ x distfiles/gromacs-4.6.5.tar.gz x packages/ x packages/fftw3-3.3.3_1.txz x packages/blas-3.4.2_2.txz x packages/mpc-1.0.2.txz x packages/libXau-1.0.8_2.txz x packages/xproto-7.0.25.txz x packages/gmp-5.1.3_2.txz x packages/libxml2-2.9.1_1.txz x packages/python2-2_2.txz x packages/gmake-3.82_1.txz x packages/libXdmcp-1.1.1_2.txz x packages/xtrans-1.3.4_1.txz x packages/gettext-0.18.3.1_1.txz x packages/perl5-5.16.3_10.txz x packages/libgpg-error-1.13.txz x packages/libxslt-1.1.28_3.txz x packages/gsl-1.16.txz x packages/cmake-2.8.12.1_4.txz x packages/python27-2.7.6_4.txz x packages/libXext-1.3.2_2,1.txz x packages/kbproto-1.0.6.txz x packages/mpfr-3.1.2_2.txz x packages/inputproto-2.3.txz x packages/gcc-4.7.3_1.txz x packages/libxcb-1.10_2.txz x packages/xextproto-7.3.0.txz x packages/xcmiscproto-1.2.2.txz x packages/libpthread-stubs-0.3_4.txz x packages/libgcrypt-1.5.3_2.txz x packages/pkg-1.2.7_2.txz x packages/lapack-3.4.2_2.txz x packages/libX11-1.6.2_2,1.txz x packages/binutils-2.24.txz x packages/bigreqsproto-1.1.2.txz x packages/bison-2.7.1,1.txz x packages/xf86bigfontproto-1.2.0.txz x packages/fftw3-float-3.3.3_1.txz x packages/libtool-2.4.2_3.txz x packages/pkgconf-0.9.5.txz x packages/xorg-macros-1.19.0.txz x packages/libcheck-0.9.12.txz x packages/m4-1.4.17_1,1.txz x packages/xcb-proto-1.10_1.txz x packages/cmake-modules-2.8.12.1_1.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> gromacs-4.6.5_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on shared library: libgsl.so - not found ===> Verifying for libgsl.so in /buildshare/ports/355755/math/gsl ===> Installing existing package /packages/gsl-1.16.txz Installing gsl-1.16... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on shared library: libblas.so - not found ===> Verifying for libblas.so in /buildshare/ports/355755/math/blas ===> Installing existing package /packages/blas-3.4.2_2.txz Installing blas-3.4.2_2...Installing gcc-4.7.3_1...Installing binutils-2.24...Installing gettext-0.18.3.1_1... done done Installing gmp-5.1.3_2... done Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done done done done To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on shared library: liblapack.so - not found ===> Verifying for liblapack.so in /buildshare/ports/355755/math/lapack ===> Installing existing package /packages/lapack-3.4.2_2.txz Installing lapack-3.4.2_2... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on shared library: libfftw3f.so - not found ===> Verifying for libfftw3f.so in /buildshare/ports/355755/math/fftw3-float ===> Installing existing package /packages/fftw3-float-3.3.3_1.txz Installing fftw3-float-3.3.3_1... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on package: fftw3>0 - not found ===> Verifying install for fftw3>0 in /buildshare/ports/355755/math/fftw3 ===> Installing existing package /packages/fftw3-3.3.3_1.txz Installing fftw3-3.3.3_1... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/cmake - not found ===> Verifying install for /usr/local/bin/cmake in /buildshare/ports/355755/devel/cmake ===> Installing existing package /packages/cmake-2.8.12.1_4.txz Installing cmake-2.8.12.1_4...Installing cmake-modules-2.8.12.1_1... done done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on executable: gfortran47 - found ===> gromacs-4.6.5_2 depends on executable: pkgconf - not found ===> Verifying install for pkgconf in /buildshare/ports/355755/devel/pkgconf ===> Installing existing package /packages/pkgconf-0.9.5.txz Installing pkgconf-0.9.5... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/as - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xext.pc in /buildshare/ports/355755/x11/libXext ===> Installing existing package /packages/libXext-1.3.2_2,1.txz Installing libXext-1.3.2_2,1...Installing libX11-1.6.2_2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8_2...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1_2... done Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_4... done Installing libxml2-2.9.1_1... done done done Installing xextproto-7.3.0... done done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/perl5.16.3 - not found ===> Verifying install for /usr/local/bin/perl5.16.3 in /buildshare/ports/355755/lang/perl5.16 ===> Installing existing package /packages/perl5-5.16.3_10.txz Installing perl5-5.16.3_10... done ===> Returning to build of gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on executable: gfortran47 - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/perl5.16.3 - found Make install ===> License LGPL21 accepted by the user ===> gromacs-4.6.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gromacs-4.6.5_2 for building ===> Extracting for gromacs-4.6.5_2 => SHA256 Checksum OK for gromacs-4.6.5.tar.gz. ===> Patching for gromacs-4.6.5_2 ===> Applying FreeBSD patches for gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on package: fftw3>0 - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/cmake - found ===> gromacs-4.6.5_2 depends on executable: gfortran47 - found ===> gromacs-4.6.5_2 depends on executable: pkgconf - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/as - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/perl5.16.3 - found ===> gromacs-4.6.5_2 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so.17) ===> gromacs-4.6.5_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so.2) ===> gromacs-4.6.5_2 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so.4) ===> gromacs-4.6.5_2 depends on shared library: libfftw3f.so - found (/usr/local/lib/libfftw3f.so.6) ===> Configuring for gromacs-4.6.5_2 ===> Performing in-source build /bin/mkdir -p /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 -- The C compiler identification is GNU 4.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v3.2+), disabling native GPU acceleration -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_WARN_EXTRA -- Performing Test CFLAGS_WARN_EXTRA - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Failed -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file limits.h -- Looking for include file limits.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file direct.h -- Looking for include file direct.h - not found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file rpc/rpc.h -- Looking for include file rpc/rpc.h - found -- Looking for include files rpc/rpc.h, rpc/xdr.h -- Looking for include files rpc/rpc.h, rpc/xdr.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for sched_setaffinity -- Looking for sched_setaffinity - not found -- Looking for sched_getaffinity -- Looking for sched_getaffinity - not found -- Looking for rsqrt -- Looking for rsqrt - not found -- Looking for rsqrtf -- Looking for rsqrtf - not found -- Looking for sqrtf -- Looking for sqrtf - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.28") -- checking for module 'gsl' -- found gsl, version 1.16 -- Found GSL: /usr/local/lib/libgsl.so -- Looking for cblas_dsyrk in /usr/local/lib/libgslcblas.so; -- Looking for cblas_dsyrk in /usr/local/lib/libgslcblas.so; - found -- Looking for gsl_linalg_QR_decomp in /usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so; -- Looking for gsl_linalg_QR_decomp in /usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so; - found -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/local/lib/libX11.so -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Found Threads: TRUE -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Failed -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build user/date/host/cpu information -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - unknown -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - __inline__ -- Checking for restrict keyword -- Checking for restrict keyword - __restrict__ -- Checking for pipe support -- Checking for isfinite -- Performing Test isfinite_compile_ok -- Performing Test isfinite_compile_ok - Success -- Checking for isfinite - yes -- Checking for _isfinite -- Performing Test _isfinite_compile_ok -- Performing Test _isfinite_compile_ok - Failed -- Checking for _isfinite - no -- Checking for _finite -- Performing Test _finite_compile_ok -- Performing Test _finite_compile_ok - Failed -- Checking for _finite - no -- Checking for system XDR support -- Checking for system XDR support - present -- checking for module 'fftw3f' -- found fftw3f, version 3.3.3 -- Looking for fftwf_plan_r2r_1d in /usr/local/lib/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/local/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_avx in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/local/lib/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Found the ability to use plug-ins when building shared libaries, so will compile to use plug-ins (e.g. to read VMD-supported file formats). -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_MODULE_LINKER_FLAGS -- Build files have been written to: /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 ===> Building for gromacs-4.6.5_2 /usr/local/bin/cmake -H/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 -B/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f share/template/CMakeFiles/gromacs_include_links.dir/build.make share/template/CMakeFiles/gromacs_include_links.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template/CMakeFiles/gromacs_include_links.dir/DependInfo.cmake Scanning dependencies of target gromacs_include_links /usr/bin/make -f share/template/CMakeFiles/gromacs_include_links.dir/build.make share/template/CMakeFiles/gromacs_include_links.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 0%] Generating gromacs cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template && /usr/local/bin/cmake -E copy_directory /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include gromacs /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 0%] Built target gromacs_include_links /usr/bin/make -f src/gmxlib/CMakeFiles/gmx.dir/build.make src/gmxlib/CMakeFiles/gmx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/CMakeFiles/gmx.dir/DependInfo.cmake Scanning dependencies of target gmx /usr/bin/make -f src/gmxlib/CMakeFiles/gmx.dir/build.make src/gmxlib/CMakeFiles/gmx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/tpxio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/tpxio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/tpxio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 12 [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/viewit.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/viewit.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/viewit.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/macros.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/macros.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/macros.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/readinp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/readinp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/readinp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/replace.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/replace.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/replace.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/network.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/network.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/network.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_detect_hardware.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_detect_hardware.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_detect_hardware.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_xdr.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include 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CMakeFiles/gmx.dir/gmx_thread_affinity.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_thread_affinity.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mshift.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mshift.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mshift.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_omp_nthreads.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_omp_nthreads.c.o -c 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cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 14 [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/index.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/index.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/index.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/vmddlopen.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/vmddlopen.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/vmddlopen.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/wgms.c.o cd 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-DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_omp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_omp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/vmdio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/vmdio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/vmdio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/calcgrid.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/calcgrid.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/calcgrid.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/disre.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/disre.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/disre.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 3%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pbc.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src 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CMakeFiles/gmx.dir/gmx_arpack.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_arpack.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/3dview.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/3dview.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/3dview.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/xtcio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/xtcio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/xtcio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/md5.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/md5.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/md5.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/txtdump.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/txtdump.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/txtdump.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sighandler.c.o cd 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CMakeFiles/gmx.dir/gmxfio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/atomprop.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/atomprop.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/topsort.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/topsort.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/topsort.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/splitter.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/splitter.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/splitter.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 17 [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sparsematrix.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sparsematrix.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sparsematrix.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/shift_util.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/shift_util.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/shift_util.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 6%] Building C object src/gmxlib/CMakeFiles/gmx.dir/chargegroup.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers 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CMakeFiles/gmx.dir/rbin.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/rbin.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 18 [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/xdrd.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/xdrd.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/xdrd.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_rw.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio_rw.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio_rw.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/crecipdata.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/crecipdata.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/crecipdata.c /usr/local/bin/cmake -E cmake_progress_report 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src/gmxlib/CMakeFiles/gmx.dir/pargs.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/pargs.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/pargs.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/cinvsqrtdata.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/cinvsqrtdata.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/cinvsqrtdata.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_asc.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio_asc.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio_asc.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 7%] Building C object src/gmxlib/CMakeFiles/gmx.dir/oenv.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers 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-I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ffscanf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ffscanf.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/matio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/filenm.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 8%] Building C object src/gmxlib/CMakeFiles/gmx.dir/writeps.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/writeps.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/writeps.c 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object src/gmxlib/CMakeFiles/gmx.dir/strdb.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/strdb.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/strdb.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 20 [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o cd 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-Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/random.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/random.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/futil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/futil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/futil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/orires.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/orires.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/orires.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cpuid.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cpuid.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cpuid.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sfactor.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sfactor.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sfactor.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 10%] Building C object src/gmxlib/CMakeFiles/gmx.dir/checkpoint.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/checkpoint.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/checkpoint.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 21 [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/princ.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/princ.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/princ.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/typedefs.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/typedefs.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/typedefs.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rando.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/rando.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/rando.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/do_fit.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/do_fit.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/do_fit.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ifunc.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ifunc.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ifunc.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/copyrite.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/copyrite.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c: In function 'gmx_print_version_info': /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c:696: warning: format '%lu' expects type 'long unsigned int', but argument 3 has type 'unsigned int' /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_matrix.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_matrix.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_matrix.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/trnio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/trnio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/trnio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrnb.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrnb.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrnb.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 22 [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/md_logging.c.o cd 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-DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ewald_util.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ewald_util.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/invblock.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/invblock.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/invblock.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mvdata.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mvdata.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mvdata.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cyclecounter.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cyclecounter.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_bin.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include 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CMakeFiles/gmx.dir/libxdrf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/libxdrf.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 23 [ 13%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/compiler.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/compiler.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/selection/compiler.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 13%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/selvalue.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/selvalue.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/selection/params.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 14%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/scanner.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/scanner.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/selection/scanner.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 14%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/sm_permute.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/sm_permute.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/selection/sm_permute.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 14%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/sm_distance.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/sm_distance.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/selection/sm_keywords.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 15%] Building C object src/gmxlib/CMakeFiles/gmx.dir/selection/sm_compare.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/selection/sm_compare.c.o -c 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-fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_generic_cg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_generic_cg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 21%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 21%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 21%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 21%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 21%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 31 [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 22%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 32 [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 23%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 33 [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 24%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 34 [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 25%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 35 [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 26%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 36 [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 28%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 37 [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 29%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 38 [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 30%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 39 [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 31%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 40 [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 32%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 41 [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 33%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 42 [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 34%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 43 [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 35%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 44 [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 37%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 45 [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 38%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 46 [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 39%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 47 [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 40%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 48 [ 41%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c Linking C shared library libgmx.so cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 78 [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_none_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_none_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_lb_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_lb_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_lb_noener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_geom_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_geom_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_geom_energrp.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 43%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 79 [ 44%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_energrp.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_lb_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 44%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_none_ener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_rf_comb_none_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 44%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_lb_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 44%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_lb_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_lb_ener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 80 [ 46%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 46%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_lb_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_lb_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 46%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_geom_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_geom_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_geom_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 46%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_geom_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 46%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_lb_energrp.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_lb_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 81 [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_none_ener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_comb_lb_energrp.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_ewald_twin_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_geom_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_geom_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_tab_twin_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_lb_noener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_geom_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 47%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 82 [ 48%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_noener.c.o 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_geom_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 48%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_lb_noener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 48%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_none_noener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 49%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_lb_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_lb_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 49%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 49%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_none_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_none_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_none_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 84 [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_lb_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_lb_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_none_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_none_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_none_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_none_ener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_geom_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 50%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_comb_lb_noener.c.o -c 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_geom_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_geom_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_geom_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_geom_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_geom_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_geom_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_none_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_none_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_noener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_noener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_noener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_lb_energrp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_lb_energrp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_rf_comb_lb_energrp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 51%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_geom_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_geom_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_twin_comb_geom_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 86 [ 52%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_tab_comb_none_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 52%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_ener.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_ener.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_ewald_twin_comb_lb_ener.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 52%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o -c 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-I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/minimize.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/minimize.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 53%] Building C object src/mdlib/CMakeFiles/md.dir/qm_gamess.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/qm_gamess.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/qm_gamess.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 53%] Building C object src/mdlib/CMakeFiles/md.dir/genborn.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/genborn.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/genborn.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 53%] Building C object src/mdlib/CMakeFiles/md.dir/init.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/init.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/init.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 53%] Building C object src/mdlib/CMakeFiles/md.dir/vsite.c.o cd 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-I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/mdatom.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/mdatom.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 55%] Building C object src/mdlib/CMakeFiles/md.dir/genborn_sse2_double.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/genborn_sse2_double.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/genborn_sse2_double.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 55%] Building C object src/mdlib/CMakeFiles/md.dir/edsam.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/edsam.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/edsam.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 55%] Building C object src/mdlib/CMakeFiles/md.dir/rf_util.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/rf_util.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/rf_util.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 55%] Building C object src/mdlib/CMakeFiles/md.dir/wall.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/wall.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/wall.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 55%] Building C object src/mdlib/CMakeFiles/md.dir/groupcoord.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/ewald.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 89 [ 56%] Building C object src/mdlib/CMakeFiles/md.dir/nlistheuristics.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nlistheuristics.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nlistheuristics.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 56%] Building C object src/mdlib/CMakeFiles/md.dir/wnblist.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/wnblist.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/wnblist.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 56%] Building C object src/mdlib/CMakeFiles/md.dir/mvxvf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/mvxvf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/mvxvf.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 56%] Building C object src/mdlib/CMakeFiles/md.dir/qm_orca.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 56%] Building C object src/mdlib/CMakeFiles/md.dir/genborn_allvsall.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/genborn_allvsall.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/genborn_allvsall.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 90 [ 57%] Building C object src/mdlib/CMakeFiles/md.dir/genborn_allvsall_sse2_double.c.o cd 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 57%] Building C object src/mdlib/CMakeFiles/md.dir/nbnxn_atomdata.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/nbnxn_atomdata.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/nbnxn_atomdata.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 57%] Building C object src/mdlib/CMakeFiles/md.dir/clincs.c.o cd 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/ebin.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 58%] Building C object src/mdlib/CMakeFiles/md.dir/partdec.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/partdec.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/partdec.c /usr/local/bin/cmake -E cmake_progress_report 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-I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/gmx_fft_acml.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/gmx_fft_acml.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 58%] Building C object src/mdlib/CMakeFiles/md.dir/gmx_parallel_3dfft.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/gmx_parallel_3dfft.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/gmx_parallel_3dfft.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 58%] Building C object src/mdlib/CMakeFiles/md.dir/qm_gaussian.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/qm_gaussian.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/qm_gaussian.c /usr/local/bin/cmake -E cmake_progress_report 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/coupling.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 59%] Building C object src/mdlib/CMakeFiles/md.dir/expanded.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/expanded.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c: In function 'ExpandedEnsembleDynamics': /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c:390: warning: 'omega_m1_p1' may be used uninitialized in this function /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c:390: note: 'omega_m1_p1' was declared here /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c:390: warning: 'omega_p1_m1' may be used uninitialized in this function /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/expanded.c:390: note: 'omega_p1_m1' was declared here /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 59%] Building C object src/mdlib/CMakeFiles/md.dir/shakef.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 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-I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/stat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/stat.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 60%] Building C object src/mdlib/CMakeFiles/md.dir/update.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/update.c.o 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 60%] Building C object src/mdlib/CMakeFiles/md.dir/genborn_allvsall_sse2_single.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/genborn_allvsall_sse2_single.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/genborn_allvsall_sse2_single.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 60%] Building C object src/mdlib/CMakeFiles/md.dir/tables.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/tables.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/tables.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 60%] Building C object src/mdlib/CMakeFiles/md.dir/calcmu.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/calcmu.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/calcmu.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 94 [ 61%] Building C object src/mdlib/CMakeFiles/md.dir/perf_est.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include 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CMakeFiles/md.dir/gmx_fft_fftpack.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/gmx_fft_fftpack.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 61%] Building C object src/mdlib/CMakeFiles/md.dir/qm_mopac.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/bin/cc -DHAVE_CONFIG_H -Dmd_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/md.dir/qm_mopac.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib/qm_mopac.c /usr/local/bin/cmake -E cmake_progress_report 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-Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib && /usr/local/bin/cmake -E cmake_symlink_library libmd.so.8 libmd.so.8 libmd.so /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 [ 62%] Built target md /usr/bin/make -f src/kernel/CMakeFiles/gmxpreprocess.dir/build.make src/kernel/CMakeFiles/gmxpreprocess.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/gmxpreprocess.dir/DependInfo.cmake Scanning dependencies of target gmxpreprocess /usr/bin/make -f src/kernel/CMakeFiles/gmxpreprocess.dir/build.make src/kernel/CMakeFiles/gmxpreprocess.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 62%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o 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/usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/compute_io.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/compute_io.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/convparm.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/convparm.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/gen_ad.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/gen_ad.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/gen_vsite.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/genhydro.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/genhydro.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/gpp_bond_atomtype.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 64%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/h_db.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/h_db.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/h_db.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 62 [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hackblock.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/hackblock.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/hackblock.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hizzie.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/hizzie.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/hizzie.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/nm2type.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra 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-fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/pdb2top.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/pdb2top.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pgutil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/pgutil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/pgutil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readir.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/readir.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/readir.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readpull.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/readpull.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/readpull.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 65%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readadress.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/readadress.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/readadress.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 63 [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readrot.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/readrot.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/readrot.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/resall.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra 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-fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/sorting.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/sorting.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/specbond.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/specbond.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/ter_db.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/ter_db.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/tomorse.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/tomorse.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/topdirs.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/topdirs.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/topexcl.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/topexcl.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 66%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra 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-fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/toppush.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/toppush.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/topshake.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/topshake.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/toputil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/toputil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/tpbcmp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/vsite_parm.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/fflibutil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/fflibutil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxpreprocess_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxpreprocess.dir/xlate.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/xlate.c Linking C shared library libgmxpreprocess.so cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin -shared -Wl,-soname,libgmxpreprocess.so.8 -o libgmxpreprocess.so.8 CMakeFiles/gmxpreprocess.dir/add_par.c.o CMakeFiles/gmxpreprocess.dir/calc_verletbuf.c.o CMakeFiles/gmxpreprocess.dir/compute_io.c.o CMakeFiles/gmxpreprocess.dir/convparm.c.o CMakeFiles/gmxpreprocess.dir/gen_ad.c.o CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o CMakeFiles/gmxpreprocess.dir/genhydro.c.o CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o CMakeFiles/gmxpreprocess.dir/gpp_bond_atomtype.c.o CMakeFiles/gmxpreprocess.dir/h_db.c.o CMakeFiles/gmxpreprocess.dir/hackblock.c.o CMakeFiles/gmxpreprocess.dir/hizzie.c.o CMakeFiles/gmxpreprocess.dir/nm2type.c.o CMakeFiles/gmxpreprocess.dir/pdb2top.c.o CMakeFiles/gmxpreprocess.dir/pgutil.c.o CMakeFiles/gmxpreprocess.dir/readir.c.o CMakeFiles/gmxpreprocess.dir/readpull.c.o CMakeFiles/gmxpreprocess.dir/readadress.c.o CMakeFiles/gmxpreprocess.dir/readrot.c.o CMakeFiles/gmxpreprocess.dir/resall.c.o CMakeFiles/gmxpreprocess.dir/sorting.c.o CMakeFiles/gmxpreprocess.dir/specbond.c.o CMakeFiles/gmxpreprocess.dir/ter_db.c.o CMakeFiles/gmxpreprocess.dir/tomorse.c.o CMakeFiles/gmxpreprocess.dir/topdirs.c.o CMakeFiles/gmxpreprocess.dir/topexcl.c.o CMakeFiles/gmxpreprocess.dir/topio.c.o CMakeFiles/gmxpreprocess.dir/toppush.c.o CMakeFiles/gmxpreprocess.dir/topshake.c.o CMakeFiles/gmxpreprocess.dir/toputil.c.o CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o CMakeFiles/gmxpreprocess.dir/fflibutil.c.o CMakeFiles/gmxpreprocess.dir/xlate.c.o ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -fopenmp -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_symlink_library libgmxpreprocess.so.8 libgmxpreprocess.so.8 libgmxpreprocess.so /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 61 62 63 64 [ 67%] Built target gmxpreprocess /usr/bin/make -f src/kernel/CMakeFiles/g_luck.dir/build.make src/kernel/CMakeFiles/g_luck.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/g_luck.dir/DependInfo.cmake Scanning dependencies of target g_luck /usr/bin/make -f src/kernel/CMakeFiles/g_luck.dir/build.make src/kernel/CMakeFiles/g_luck.dir/build /usr/local/bin/cmake -E cmake_progress_report 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&& /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_luck.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable g_luck cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_luck.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_luck.dir/g_luck.c.o CMakeFiles/g_luck.dir/main.c.o -o g_luck libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Built target g_luck /usr/bin/make -f src/kernel/CMakeFiles/g_protonate.dir/build.make src/kernel/CMakeFiles/g_protonate.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/g_protonate.dir/DependInfo.cmake Scanning dependencies of target g_protonate /usr/bin/make -f src/kernel/CMakeFiles/g_protonate.dir/build.make src/kernel/CMakeFiles/g_protonate.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_protonate.dir/g_protonate.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/g_protonate.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/g_protonate.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_protonate.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable g_protonate cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_protonate.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_protonate.dir/g_protonate.c.o CMakeFiles/g_protonate.dir/main.c.o -o g_protonate libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Built target g_protonate /usr/bin/make -f src/kernel/CMakeFiles/g_x2top.dir/build.make src/kernel/CMakeFiles/g_x2top.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/g_x2top.dir/DependInfo.cmake Scanning dependencies of target g_x2top /usr/bin/make -f src/kernel/CMakeFiles/g_x2top.dir/build.make src/kernel/CMakeFiles/g_x2top.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_x2top.dir/g_x2top.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/g_x2top.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/g_x2top.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_x2top.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable g_x2top cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_x2top.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_x2top.dir/g_x2top.c.o CMakeFiles/g_x2top.dir/main.c.o -o g_x2top libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Built target g_x2top /usr/bin/make -f src/kernel/CMakeFiles/gmxcheck.dir/build.make src/kernel/CMakeFiles/gmxcheck.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/gmxcheck.dir/DependInfo.cmake Scanning dependencies of target gmxcheck /usr/bin/make -f src/kernel/CMakeFiles/gmxcheck.dir/build.make src/kernel/CMakeFiles/gmxcheck.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o cd 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-fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/gmxcheck.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable gmxcheck cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gmxcheck.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/gmxcheck.dir/gmxcheck.c.o CMakeFiles/gmxcheck.dir/main.c.o -o gmxcheck libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Built target gmxcheck /usr/bin/make -f src/kernel/CMakeFiles/gmxdump.dir/build.make src/kernel/CMakeFiles/gmxdump.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/gmxdump.dir/DependInfo.cmake Scanning dependencies of target gmxdump /usr/bin/make -f src/kernel/CMakeFiles/gmxdump.dir/build.make src/kernel/CMakeFiles/gmxdump.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/gmxdump.dir/gmxdump.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/gmxdump.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/gmxdump.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/gmxdump.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable gmxdump cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gmxdump.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/gmxdump.dir/gmxdump.c.o CMakeFiles/gmxdump.dir/main.c.o -o gmxdump libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Built target gmxdump /usr/bin/make -f src/kernel/CMakeFiles/grompp.dir/build.make src/kernel/CMakeFiles/grompp.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/grompp.dir/DependInfo.cmake Scanning dependencies of target grompp /usr/bin/make -f src/kernel/CMakeFiles/grompp.dir/build.make src/kernel/CMakeFiles/grompp.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 67%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/grompp.dir/grompp.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/grompp.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 65 [ 68%] Building C object src/kernel/CMakeFiles/grompp.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/grompp.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable grompp cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/grompp.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/grompp.dir/grompp.c.o CMakeFiles/grompp.dir/main.c.o -o grompp libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 65 [ 68%] Built target grompp /usr/bin/make -f src/kernel/CMakeFiles/mdrun.dir/build.make src/kernel/CMakeFiles/mdrun.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/mdrun.dir/DependInfo.cmake Scanning dependencies of target mdrun /usr/bin/make -f src/kernel/CMakeFiles/mdrun.dir/build.make src/kernel/CMakeFiles/mdrun.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 68%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/gctio.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/gctio.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 68%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/ionize.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/ionize.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 68%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/runner.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/runner.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 68%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/do_gct.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/do_gct.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 68%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/repl_ex.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/repl_ex.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 96 [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/xutils.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/xutils.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/pme_loadbal.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/pme_loadbal.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/pme_loadbal.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/md.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/md.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/mdrun.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/mdrun.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/genalg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/genalg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/membed.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/membed.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/membed.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 69%] Building C object src/kernel/CMakeFiles/mdrun.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/mdrun.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable mdrun cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/mdrun.dir/gctio.c.o CMakeFiles/mdrun.dir/ionize.c.o CMakeFiles/mdrun.dir/runner.c.o CMakeFiles/mdrun.dir/do_gct.c.o CMakeFiles/mdrun.dir/repl_ex.c.o CMakeFiles/mdrun.dir/xutils.c.o CMakeFiles/mdrun.dir/pme_loadbal.c.o CMakeFiles/mdrun.dir/md.c.o CMakeFiles/mdrun.dir/mdrun.c.o CMakeFiles/mdrun.dir/genalg.c.o CMakeFiles/mdrun.dir/membed.c.o CMakeFiles/mdrun.dir/main.c.o -o mdrun libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 96 [ 69%] Built target mdrun /usr/bin/make -f src/kernel/CMakeFiles/pdb2gmx.dir/build.make src/kernel/CMakeFiles/pdb2gmx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/pdb2gmx.dir/DependInfo.cmake Scanning dependencies of target pdb2gmx /usr/bin/make -f src/kernel/CMakeFiles/pdb2gmx.dir/build.make src/kernel/CMakeFiles/pdb2gmx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 99 [ 70%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/pdb2gmx.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/main.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/pdb2gmx.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable pdb2gmx cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o CMakeFiles/pdb2gmx.dir/main.c.o -o pdb2gmx libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 99 [ 70%] Built target pdb2gmx /usr/bin/make -f src/kernel/CMakeFiles/tpbconv.dir/build.make src/kernel/CMakeFiles/tpbconv.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/CMakeFiles/tpbconv.dir/DependInfo.cmake Scanning dependencies of target tpbconv /usr/bin/make -f src/kernel/CMakeFiles/tpbconv.dir/build.make src/kernel/CMakeFiles/tpbconv.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] 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-Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/tpbconv.dir/main.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel/main.c Linking C executable tpbconv cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/tpbconv.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/tpbconv.dir/tpbconv.c.o CMakeFiles/tpbconv.dir/main.c.o -o tpbconv libgmxpreprocess.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/kernel:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Built target tpbconv /usr/bin/make -f src/tools/CMakeFiles/gmxana.dir/build.make src/tools/CMakeFiles/gmxana.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/gmxana.dir/DependInfo.cmake Scanning dependencies of target gmxana /usr/bin/make -f src/tools/CMakeFiles/gmxana.dir/build.make src/tools/CMakeFiles/gmxana.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/tools/CMakeFiles/gmxana.dir/autocorr.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/autocorr.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/autocorr.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/tools/CMakeFiles/gmxana.dir/expfit.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/expfit.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/expfit.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/tools/CMakeFiles/gmxana.dir/polynomials.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/polynomials.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/polynomials.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/tools/CMakeFiles/gmxana.dir/levenmar.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/levenmar.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/levenmar.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 70%] Building C object src/tools/CMakeFiles/gmxana.dir/anadih.c.o cd 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cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_make_ndx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/gmx_make_ndx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/gmx_make_ndx.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_mk_angndx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Dgmxana_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -fopenmp -o CMakeFiles/gmxana.dir/gmx_mk_angndx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/gmx_mk_angndx.c Linking C shared library libgmxana.so cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gmxana.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer 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CMakeFiles/gmxana.dir/gmx_do_dssp.c.o CMakeFiles/gmxana.dir/gmx_anadock.c.o CMakeFiles/gmxana.dir/gmx_make_ndx.c.o CMakeFiles/gmxana.dir/gmx_mk_angndx.c.o ../mdlib/libmd.so.8 /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so ../gmxlib/libgmx.so.8 /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -fopenmp -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/usr/local/lib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib: cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_symlink_library libgmxana.so.8 libgmxana.so.8 libgmxana.so /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 49 50 51 52 53 54 55 56 57 58 59 60 [ 84%] Built target gmxana /usr/bin/make -f src/tools/CMakeFiles/do_dssp.dir/build.make src/tools/CMakeFiles/do_dssp.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/do_dssp.dir/DependInfo.cmake Scanning dependencies of target do_dssp /usr/bin/make -f src/tools/CMakeFiles/do_dssp.dir/build.make src/tools/CMakeFiles/do_dssp.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers 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../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target do_dssp /usr/bin/make -f src/tools/CMakeFiles/editconf.dir/build.make src/tools/CMakeFiles/editconf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/editconf.dir/DependInfo.cmake Scanning dependencies of target editconf /usr/bin/make -f src/tools/CMakeFiles/editconf.dir/build.make src/tools/CMakeFiles/editconf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src 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-Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target editconf /usr/bin/make -f src/tools/CMakeFiles/eneconv.dir/build.make src/tools/CMakeFiles/eneconv.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/eneconv.dir/DependInfo.cmake Scanning dependencies of target eneconv /usr/bin/make -f src/tools/CMakeFiles/eneconv.dir/build.make src/tools/CMakeFiles/eneconv.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/eneconv.dir/eneconv.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/eneconv.c Linking C executable eneconv cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/eneconv.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/eneconv.dir/eneconv.c.o -o eneconv libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target eneconv /usr/bin/make -f src/tools/CMakeFiles/g_anadock.dir/build.make src/tools/CMakeFiles/g_anadock.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_anadock.dir/DependInfo.cmake Scanning dependencies of target g_anadock /usr/bin/make -f src/tools/CMakeFiles/g_anadock.dir/build.make src/tools/CMakeFiles/g_anadock.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_anadock.dir/g_anadock.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_anadock.c Linking C executable g_anadock cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_anadock.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_anadock.dir/g_anadock.c.o -o g_anadock libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target g_anadock /usr/bin/make -f src/tools/CMakeFiles/g_anaeig.dir/build.make src/tools/CMakeFiles/g_anaeig.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_anaeig.dir/DependInfo.cmake Scanning dependencies of target g_anaeig /usr/bin/make -f src/tools/CMakeFiles/g_anaeig.dir/build.make src/tools/CMakeFiles/g_anaeig.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_anaeig.dir/g_anaeig.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_anaeig.c Linking C executable g_anaeig cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_anaeig.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_anaeig.dir/g_anaeig.c.o -o g_anaeig libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target g_anaeig /usr/bin/make -f src/tools/CMakeFiles/g_analyze.dir/build.make src/tools/CMakeFiles/g_analyze.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_analyze.dir/DependInfo.cmake Scanning dependencies of target g_analyze /usr/bin/make -f src/tools/CMakeFiles/g_analyze.dir/build.make src/tools/CMakeFiles/g_analyze.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_analyze.dir/g_analyze.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_analyze.c Linking C executable g_analyze cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_analyze.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_analyze.dir/g_analyze.c.o -o g_analyze libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target g_analyze /usr/bin/make -f src/tools/CMakeFiles/g_angle.dir/build.make src/tools/CMakeFiles/g_angle.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_angle.dir/DependInfo.cmake Scanning dependencies of target g_angle /usr/bin/make -f src/tools/CMakeFiles/g_angle.dir/build.make src/tools/CMakeFiles/g_angle.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_angle.dir/g_angle.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_angle.c Linking C executable g_angle cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_angle.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_angle.dir/g_angle.c.o -o g_angle libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target g_angle /usr/bin/make -f src/tools/CMakeFiles/g_bar.dir/build.make src/tools/CMakeFiles/g_bar.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_bar.dir/DependInfo.cmake Scanning dependencies of target g_bar /usr/bin/make -f src/tools/CMakeFiles/g_bar.dir/build.make src/tools/CMakeFiles/g_bar.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_bar.dir/g_bar.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_bar.c Linking C executable g_bar cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_bar.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_bar.dir/g_bar.c.o -o g_bar libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 84%] Built target g_bar /usr/bin/make -f src/tools/CMakeFiles/g_bond.dir/build.make src/tools/CMakeFiles/g_bond.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_bond.dir/DependInfo.cmake Scanning dependencies of target g_bond /usr/bin/make -f src/tools/CMakeFiles/g_bond.dir/build.make src/tools/CMakeFiles/g_bond.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 1 [ 85%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_bond.dir/g_bond.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_bond.c Linking C executable g_bond cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_bond.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_bond.dir/g_bond.c.o -o g_bond libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 1 [ 85%] Built target g_bond /usr/bin/make -f src/tools/CMakeFiles/g_bundle.dir/build.make src/tools/CMakeFiles/g_bundle.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_bundle.dir/DependInfo.cmake Scanning dependencies of target g_bundle /usr/bin/make -f src/tools/CMakeFiles/g_bundle.dir/build.make src/tools/CMakeFiles/g_bundle.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_bundle.dir/g_bundle.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_bundle.c Linking C executable g_bundle cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_bundle.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_bundle.dir/g_bundle.c.o -o g_bundle libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_bundle /usr/bin/make -f src/tools/CMakeFiles/g_chi.dir/build.make src/tools/CMakeFiles/g_chi.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_chi.dir/DependInfo.cmake Scanning dependencies of target g_chi /usr/bin/make -f src/tools/CMakeFiles/g_chi.dir/build.make src/tools/CMakeFiles/g_chi.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_chi.dir/g_chi.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_chi.c Linking C executable g_chi cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_chi.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_chi.dir/g_chi.c.o -o g_chi libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_chi /usr/bin/make -f src/tools/CMakeFiles/g_cluster.dir/build.make src/tools/CMakeFiles/g_cluster.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_cluster.dir/DependInfo.cmake Scanning dependencies of target g_cluster /usr/bin/make -f src/tools/CMakeFiles/g_cluster.dir/build.make src/tools/CMakeFiles/g_cluster.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_cluster.dir/g_cluster.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_cluster.c Linking C executable g_cluster cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_cluster.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_cluster.dir/g_cluster.c.o -o g_cluster libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_cluster /usr/bin/make -f src/tools/CMakeFiles/g_clustsize.dir/build.make src/tools/CMakeFiles/g_clustsize.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_clustsize.dir/DependInfo.cmake Scanning dependencies of target g_clustsize /usr/bin/make -f src/tools/CMakeFiles/g_clustsize.dir/build.make src/tools/CMakeFiles/g_clustsize.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_clustsize.dir/g_clustsize.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_clustsize.c Linking C executable g_clustsize cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_clustsize.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_clustsize.dir/g_clustsize.c.o -o g_clustsize libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_clustsize /usr/bin/make -f src/tools/CMakeFiles/g_confrms.dir/build.make src/tools/CMakeFiles/g_confrms.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_confrms.dir/DependInfo.cmake Scanning dependencies of target g_confrms /usr/bin/make -f src/tools/CMakeFiles/g_confrms.dir/build.make src/tools/CMakeFiles/g_confrms.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_confrms.dir/g_confrms.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_confrms.c Linking C executable g_confrms cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_confrms.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_confrms.dir/g_confrms.c.o -o g_confrms libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_confrms /usr/bin/make -f src/tools/CMakeFiles/g_covar.dir/build.make src/tools/CMakeFiles/g_covar.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_covar.dir/DependInfo.cmake Scanning dependencies of target g_covar /usr/bin/make -f src/tools/CMakeFiles/g_covar.dir/build.make src/tools/CMakeFiles/g_covar.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_covar.dir/g_covar.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_covar.c Linking C executable g_covar cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_covar.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_covar.dir/g_covar.c.o -o g_covar libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_covar /usr/bin/make -f src/tools/CMakeFiles/g_current.dir/build.make src/tools/CMakeFiles/g_current.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_current.dir/DependInfo.cmake Scanning dependencies of target g_current /usr/bin/make -f src/tools/CMakeFiles/g_current.dir/build.make src/tools/CMakeFiles/g_current.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_current.dir/g_current.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_current.c Linking C executable g_current cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_current.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_current.dir/g_current.c.o -o g_current libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_current /usr/bin/make -f src/tools/CMakeFiles/g_density.dir/build.make src/tools/CMakeFiles/g_density.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_density.dir/DependInfo.cmake Scanning dependencies of target g_density /usr/bin/make -f src/tools/CMakeFiles/g_density.dir/build.make src/tools/CMakeFiles/g_density.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_density.dir/g_density.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_density.c Linking C executable g_density cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_density.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_density.dir/g_density.c.o -o g_density libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 85%] Built target g_density /usr/bin/make -f src/tools/CMakeFiles/g_densmap.dir/build.make src/tools/CMakeFiles/g_densmap.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_densmap.dir/DependInfo.cmake Scanning dependencies of target g_densmap /usr/bin/make -f src/tools/CMakeFiles/g_densmap.dir/build.make src/tools/CMakeFiles/g_densmap.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 2 [ 86%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_densmap.dir/g_densmap.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_densmap.c Linking C executable g_densmap cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_densmap.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_densmap.dir/g_densmap.c.o -o g_densmap libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 2 [ 86%] Built target g_densmap /usr/bin/make -f src/tools/CMakeFiles/g_densorder.dir/build.make src/tools/CMakeFiles/g_densorder.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_densorder.dir/DependInfo.cmake Scanning dependencies of target g_densorder /usr/bin/make -f src/tools/CMakeFiles/g_densorder.dir/build.make src/tools/CMakeFiles/g_densorder.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_densorder.dir/g_densorder.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_densorder.c Linking C executable g_densorder cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_densorder.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_densorder.dir/g_densorder.c.o -o g_densorder libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_densorder /usr/bin/make -f src/tools/CMakeFiles/g_dielectric.dir/build.make src/tools/CMakeFiles/g_dielectric.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dielectric.dir/DependInfo.cmake Scanning dependencies of target g_dielectric /usr/bin/make -f src/tools/CMakeFiles/g_dielectric.dir/build.make src/tools/CMakeFiles/g_dielectric.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dielectric.dir/g_dielectric.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dielectric.c Linking C executable g_dielectric cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dielectric.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dielectric.dir/g_dielectric.c.o -o g_dielectric libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dielectric /usr/bin/make -f src/tools/CMakeFiles/g_dipoles.dir/build.make src/tools/CMakeFiles/g_dipoles.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dipoles.dir/DependInfo.cmake Scanning dependencies of target g_dipoles /usr/bin/make -f src/tools/CMakeFiles/g_dipoles.dir/build.make src/tools/CMakeFiles/g_dipoles.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dipoles.dir/g_dipoles.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dipoles.c Linking C executable g_dipoles cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dipoles.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dipoles.dir/g_dipoles.c.o -o g_dipoles libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dipoles /usr/bin/make -f src/tools/CMakeFiles/g_disre.dir/build.make src/tools/CMakeFiles/g_disre.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_disre.dir/DependInfo.cmake Scanning dependencies of target g_disre /usr/bin/make -f src/tools/CMakeFiles/g_disre.dir/build.make src/tools/CMakeFiles/g_disre.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_disre.dir/g_disre.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_disre.c Linking C executable g_disre cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_disre.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_disre.dir/g_disre.c.o -o g_disre libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_disre /usr/bin/make -f src/tools/CMakeFiles/g_dist.dir/build.make src/tools/CMakeFiles/g_dist.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dist.dir/DependInfo.cmake Scanning dependencies of target g_dist /usr/bin/make -f src/tools/CMakeFiles/g_dist.dir/build.make src/tools/CMakeFiles/g_dist.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dist.dir/g_dist.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dist.c Linking C executable g_dist cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dist.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dist.dir/g_dist.c.o -o g_dist libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dist /usr/bin/make -f src/tools/CMakeFiles/g_dos.dir/build.make src/tools/CMakeFiles/g_dos.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dos.dir/DependInfo.cmake Scanning dependencies of target g_dos /usr/bin/make -f src/tools/CMakeFiles/g_dos.dir/build.make src/tools/CMakeFiles/g_dos.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dos.dir/g_dos.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dos.c Linking C executable g_dos cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dos.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dos.dir/g_dos.c.o -o g_dos libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dos /usr/bin/make -f src/tools/CMakeFiles/g_dyecoupl.dir/build.make src/tools/CMakeFiles/g_dyecoupl.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dyecoupl.dir/DependInfo.cmake Scanning dependencies of target g_dyecoupl /usr/bin/make -f src/tools/CMakeFiles/g_dyecoupl.dir/build.make src/tools/CMakeFiles/g_dyecoupl.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dyecoupl.dir/g_dyecoupl.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dyecoupl.dir/g_dyecoupl.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dyecoupl.c Linking C executable g_dyecoupl cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dyecoupl.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dyecoupl.dir/g_dyecoupl.c.o -o g_dyecoupl libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dyecoupl /usr/bin/make -f src/tools/CMakeFiles/g_dyndom.dir/build.make src/tools/CMakeFiles/g_dyndom.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_dyndom.dir/DependInfo.cmake Scanning dependencies of target g_dyndom /usr/bin/make -f src/tools/CMakeFiles/g_dyndom.dir/build.make src/tools/CMakeFiles/g_dyndom.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_dyndom.dir/g_dyndom.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_dyndom.c Linking C executable g_dyndom cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_dyndom.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_dyndom.dir/g_dyndom.c.o -o g_dyndom libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 86%] Built target g_dyndom /usr/bin/make -f src/tools/CMakeFiles/g_enemat.dir/build.make src/tools/CMakeFiles/g_enemat.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_enemat.dir/DependInfo.cmake Scanning dependencies of target g_enemat /usr/bin/make -f src/tools/CMakeFiles/g_enemat.dir/build.make src/tools/CMakeFiles/g_enemat.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 3 [ 87%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_enemat.dir/g_enemat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_enemat.c Linking C executable g_enemat cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_enemat.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_enemat.dir/g_enemat.c.o -o g_enemat libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 3 [ 87%] Built target g_enemat /usr/bin/make -f src/tools/CMakeFiles/g_energy.dir/build.make src/tools/CMakeFiles/g_energy.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_energy.dir/DependInfo.cmake Scanning dependencies of target g_energy /usr/bin/make -f src/tools/CMakeFiles/g_energy.dir/build.make src/tools/CMakeFiles/g_energy.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_energy.dir/g_energy.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_energy.c Linking C executable g_energy cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_energy.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_energy.dir/g_energy.c.o -o g_energy libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_energy /usr/bin/make -f src/tools/CMakeFiles/g_filter.dir/build.make src/tools/CMakeFiles/g_filter.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_filter.dir/DependInfo.cmake Scanning dependencies of target g_filter /usr/bin/make -f src/tools/CMakeFiles/g_filter.dir/build.make src/tools/CMakeFiles/g_filter.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_filter.dir/g_filter.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_filter.c Linking C executable g_filter cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_filter.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_filter.dir/g_filter.c.o -o g_filter libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_filter /usr/bin/make -f src/tools/CMakeFiles/g_gyrate.dir/build.make src/tools/CMakeFiles/g_gyrate.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_gyrate.dir/DependInfo.cmake Scanning dependencies of target g_gyrate /usr/bin/make -f src/tools/CMakeFiles/g_gyrate.dir/build.make src/tools/CMakeFiles/g_gyrate.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_gyrate.dir/g_gyrate.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_gyrate.c Linking C executable g_gyrate cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_gyrate.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_gyrate.dir/g_gyrate.c.o -o g_gyrate libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_h2order.dir/DependInfo.cmake Scanning dependencies of target g_h2order /usr/bin/make -f src/tools/CMakeFiles/g_h2order.dir/build.make src/tools/CMakeFiles/g_h2order.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_h2order.dir/g_h2order.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_h2order.c Linking C executable g_h2order cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_h2order.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_h2order.dir/g_h2order.c.o -o g_h2order libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_h2order /usr/bin/make -f src/tools/CMakeFiles/g_hbond.dir/build.make src/tools/CMakeFiles/g_hbond.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_hbond.dir/DependInfo.cmake Scanning dependencies of target g_hbond /usr/bin/make -f src/tools/CMakeFiles/g_hbond.dir/build.make src/tools/CMakeFiles/g_hbond.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_hbond.dir/g_hbond.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_hbond.c Linking C executable g_hbond cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_hbond.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_hbond.dir/g_hbond.c.o -o g_hbond libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_hbond /usr/bin/make -f src/tools/CMakeFiles/g_helix.dir/build.make src/tools/CMakeFiles/g_helix.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_helix.dir/DependInfo.cmake Scanning dependencies of target g_helix /usr/bin/make -f src/tools/CMakeFiles/g_helix.dir/build.make src/tools/CMakeFiles/g_helix.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_helix.dir/g_helix.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_helix.c Linking C executable g_helix cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_helix.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_helix.dir/g_helix.c.o -o g_helix libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_helix /usr/bin/make -f src/tools/CMakeFiles/g_helixorient.dir/build.make src/tools/CMakeFiles/g_helixorient.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_helixorient.dir/DependInfo.cmake Scanning dependencies of target g_helixorient /usr/bin/make -f src/tools/CMakeFiles/g_helixorient.dir/build.make src/tools/CMakeFiles/g_helixorient.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_helixorient.dir/g_helixorient.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_helixorient.c Linking C executable g_helixorient cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_helixorient.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_helixorient.dir/g_helixorient.c.o -o g_helixorient libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 87%] Built target g_helixorient /usr/bin/make -f src/tools/CMakeFiles/g_hydorder.dir/build.make src/tools/CMakeFiles/g_hydorder.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_hydorder.dir/DependInfo.cmake Scanning dependencies of target g_hydorder /usr/bin/make -f src/tools/CMakeFiles/g_hydorder.dir/build.make src/tools/CMakeFiles/g_hydorder.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 4 [ 88%] Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_hydorder.dir/g_hydorder.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_hydorder.c Linking C executable g_hydorder cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_hydorder.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_hydorder.dir/g_hydorder.c.o -o g_hydorder libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 4 [ 88%] Built target g_hydorder /usr/bin/make -f src/tools/CMakeFiles/g_kinetics.dir/build.make src/tools/CMakeFiles/g_kinetics.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_kinetics.dir/DependInfo.cmake Scanning dependencies of target g_kinetics /usr/bin/make -f src/tools/CMakeFiles/g_kinetics.dir/build.make src/tools/CMakeFiles/g_kinetics.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_kinetics.dir/g_kinetics.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_kinetics.c Linking C executable g_kinetics cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_kinetics.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_kinetics.dir/g_kinetics.c.o -o g_kinetics libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_kinetics /usr/bin/make -f src/tools/CMakeFiles/g_lie.dir/build.make src/tools/CMakeFiles/g_lie.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_lie.dir/DependInfo.cmake Scanning dependencies of target g_lie /usr/bin/make -f src/tools/CMakeFiles/g_lie.dir/build.make src/tools/CMakeFiles/g_lie.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_lie.dir/g_lie.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_lie.c Linking C executable g_lie cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_lie.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_lie.dir/g_lie.c.o -o g_lie libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_lie /usr/bin/make -f src/tools/CMakeFiles/g_mdmat.dir/build.make src/tools/CMakeFiles/g_mdmat.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_mdmat.dir/DependInfo.cmake Scanning dependencies of target g_mdmat /usr/bin/make -f src/tools/CMakeFiles/g_mdmat.dir/build.make src/tools/CMakeFiles/g_mdmat.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_mdmat.dir/g_mdmat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_mdmat.c Linking C executable g_mdmat cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_mdmat.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_mdmat.dir/g_mdmat.c.o -o g_mdmat libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_mdmat /usr/bin/make -f src/tools/CMakeFiles/g_membed.dir/build.make src/tools/CMakeFiles/g_membed.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_membed.dir/DependInfo.cmake Scanning dependencies of target g_membed /usr/bin/make -f src/tools/CMakeFiles/g_membed.dir/build.make src/tools/CMakeFiles/g_membed.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_membed.dir/g_membed.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_membed.c Linking C executable g_membed cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_membed.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_membed.dir/g_membed.c.o -o g_membed libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_membed /usr/bin/make -f src/tools/CMakeFiles/g_mindist.dir/build.make src/tools/CMakeFiles/g_mindist.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_mindist.dir/DependInfo.cmake Scanning dependencies of target g_mindist /usr/bin/make -f src/tools/CMakeFiles/g_mindist.dir/build.make src/tools/CMakeFiles/g_mindist.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_mindist.dir/g_mindist.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_mindist.c Linking C executable g_mindist cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_mindist.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_mindist.dir/g_mindist.c.o -o g_mindist libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_mindist /usr/bin/make -f src/tools/CMakeFiles/g_morph.dir/build.make src/tools/CMakeFiles/g_morph.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_morph.dir/DependInfo.cmake Scanning dependencies of target g_morph /usr/bin/make -f src/tools/CMakeFiles/g_morph.dir/build.make src/tools/CMakeFiles/g_morph.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_morph.dir/g_morph.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_morph.c Linking C executable g_morph cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_morph.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_morph.dir/g_morph.c.o -o g_morph libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 88%] Built target g_morph /usr/bin/make -f src/tools/CMakeFiles/g_msd.dir/build.make src/tools/CMakeFiles/g_msd.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_msd.dir/DependInfo.cmake Scanning dependencies of target g_msd /usr/bin/make -f src/tools/CMakeFiles/g_msd.dir/build.make src/tools/CMakeFiles/g_msd.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 5 [ 89%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_msd.dir/g_msd.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_msd.c Linking C executable g_msd cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_msd.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_msd.dir/g_msd.c.o -o g_msd libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 5 [ 89%] Built target g_msd /usr/bin/make -f src/tools/CMakeFiles/g_nmeig.dir/build.make src/tools/CMakeFiles/g_nmeig.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_nmeig.dir/DependInfo.cmake Scanning dependencies of target g_nmeig /usr/bin/make -f src/tools/CMakeFiles/g_nmeig.dir/build.make src/tools/CMakeFiles/g_nmeig.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_nmeig.dir/g_nmeig.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_nmeig.c Linking C executable g_nmeig cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_nmeig.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_nmeig.dir/g_nmeig.c.o -o g_nmeig libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_nmeig /usr/bin/make -f src/tools/CMakeFiles/g_nmens.dir/build.make src/tools/CMakeFiles/g_nmens.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_nmens.dir/DependInfo.cmake Scanning dependencies of target g_nmens /usr/bin/make -f src/tools/CMakeFiles/g_nmens.dir/build.make src/tools/CMakeFiles/g_nmens.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_nmens.dir/g_nmens.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_nmens.c Linking C executable g_nmens cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_nmens.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_nmens.dir/g_nmens.c.o -o g_nmens libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_nmens /usr/bin/make -f src/tools/CMakeFiles/g_nmtraj.dir/build.make src/tools/CMakeFiles/g_nmtraj.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_nmtraj.dir/DependInfo.cmake Scanning dependencies of target g_nmtraj /usr/bin/make -f src/tools/CMakeFiles/g_nmtraj.dir/build.make src/tools/CMakeFiles/g_nmtraj.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_nmtraj.c Linking C executable g_nmtraj cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_nmtraj.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o -o g_nmtraj libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_nmtraj /usr/bin/make -f src/tools/CMakeFiles/g_options.dir/build.make src/tools/CMakeFiles/g_options.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_options.dir/DependInfo.cmake Scanning dependencies of target g_options /usr/bin/make -f src/tools/CMakeFiles/g_options.dir/build.make src/tools/CMakeFiles/g_options.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_options.dir/g_options.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_options.c Linking C executable g_options cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_options.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_options.dir/g_options.c.o -o g_options libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_options /usr/bin/make -f src/tools/CMakeFiles/g_order.dir/build.make src/tools/CMakeFiles/g_order.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_order.dir/DependInfo.cmake Scanning dependencies of target g_order /usr/bin/make -f src/tools/CMakeFiles/g_order.dir/build.make src/tools/CMakeFiles/g_order.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_order.dir/g_order.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_order.c Linking C executable g_order cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_order.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_order.dir/g_order.c.o -o g_order libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_order /usr/bin/make -f src/tools/CMakeFiles/g_pme_error.dir/build.make src/tools/CMakeFiles/g_pme_error.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_pme_error.dir/DependInfo.cmake Scanning dependencies of target g_pme_error /usr/bin/make -f src/tools/CMakeFiles/g_pme_error.dir/build.make src/tools/CMakeFiles/g_pme_error.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_pme_error.dir/g_pme_error.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_pme_error.c Linking C executable g_pme_error cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_pme_error.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_pme_error.dir/g_pme_error.c.o -o g_pme_error libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_pme_error /usr/bin/make -f src/tools/CMakeFiles/g_polystat.dir/build.make src/tools/CMakeFiles/g_polystat.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_polystat.dir/DependInfo.cmake Scanning dependencies of target g_polystat /usr/bin/make -f src/tools/CMakeFiles/g_polystat.dir/build.make src/tools/CMakeFiles/g_polystat.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_polystat.dir/g_polystat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_polystat.c Linking C executable g_polystat cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_polystat.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_polystat.dir/g_polystat.c.o -o g_polystat libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_polystat /usr/bin/make -f src/tools/CMakeFiles/g_potential.dir/build.make src/tools/CMakeFiles/g_potential.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_potential.dir/DependInfo.cmake Scanning dependencies of target g_potential /usr/bin/make -f src/tools/CMakeFiles/g_potential.dir/build.make src/tools/CMakeFiles/g_potential.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_potential.dir/g_potential.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_potential.c Linking C executable g_potential cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_potential.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_potential.dir/g_potential.c.o -o g_potential libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 89%] Built target g_potential /usr/bin/make -f src/tools/CMakeFiles/g_principal.dir/build.make src/tools/CMakeFiles/g_principal.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_principal.dir/DependInfo.cmake Scanning dependencies of target g_principal /usr/bin/make -f src/tools/CMakeFiles/g_principal.dir/build.make src/tools/CMakeFiles/g_principal.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 6 [ 91%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_principal.dir/g_principal.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_principal.c Linking C executable g_principal cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_principal.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_principal.dir/g_principal.c.o -o g_principal libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rama.dir/DependInfo.cmake Scanning dependencies of target g_rama /usr/bin/make -f src/tools/CMakeFiles/g_rama.dir/build.make src/tools/CMakeFiles/g_rama.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rama.dir/g_rama.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rama.c Linking C executable g_rama cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rama.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rama.dir/g_rama.c.o -o g_rama libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Built target g_rama /usr/bin/make -f src/tools/CMakeFiles/g_rdf.dir/build.make src/tools/CMakeFiles/g_rdf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rdf.dir/DependInfo.cmake Scanning dependencies of target g_rdf /usr/bin/make -f src/tools/CMakeFiles/g_rdf.dir/build.make src/tools/CMakeFiles/g_rdf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rdf.dir/g_rdf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rdf.c Linking C executable g_rdf cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rdf.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rdf.dir/g_rdf.c.o -o g_rdf libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Built target g_rdf /usr/bin/make -f src/tools/CMakeFiles/g_rms.dir/build.make src/tools/CMakeFiles/g_rms.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rms.dir/DependInfo.cmake Scanning dependencies of target g_rms /usr/bin/make -f src/tools/CMakeFiles/g_rms.dir/build.make src/tools/CMakeFiles/g_rms.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rms.dir/g_rms.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rms.c Linking C executable g_rms cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rms.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rms.dir/g_rms.c.o -o g_rms libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Built target g_rms /usr/bin/make -f src/tools/CMakeFiles/g_rmsdist.dir/build.make src/tools/CMakeFiles/g_rmsdist.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rmsdist.dir/DependInfo.cmake Scanning dependencies of target g_rmsdist /usr/bin/make -f src/tools/CMakeFiles/g_rmsdist.dir/build.make src/tools/CMakeFiles/g_rmsdist.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rmsdist.c Linking C executable g_rmsdist cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rmsdist.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o -o g_rmsdist libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Built target g_rmsdist /usr/bin/make -f src/tools/CMakeFiles/g_rmsf.dir/build.make src/tools/CMakeFiles/g_rmsf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rmsf.dir/DependInfo.cmake Scanning dependencies of target g_rmsf /usr/bin/make -f src/tools/CMakeFiles/g_rmsf.dir/build.make src/tools/CMakeFiles/g_rmsf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rmsf.dir/g_rmsf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rmsf.c Linking C executable g_rmsf cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rmsf.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rmsf.dir/g_rmsf.c.o -o g_rmsf libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 91%] Built target g_rmsf /usr/bin/make -f src/tools/CMakeFiles/g_rotacf.dir/build.make src/tools/CMakeFiles/g_rotacf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rotacf.dir/DependInfo.cmake Scanning dependencies of target g_rotacf /usr/bin/make -f src/tools/CMakeFiles/g_rotacf.dir/build.make src/tools/CMakeFiles/g_rotacf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 7 [ 92%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rotacf.dir/g_rotacf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rotacf.c Linking C executable g_rotacf cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rotacf.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rotacf.dir/g_rotacf.c.o -o g_rotacf libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 7 [ 92%] Built target g_rotacf /usr/bin/make -f src/tools/CMakeFiles/g_rotmat.dir/build.make src/tools/CMakeFiles/g_rotmat.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_rotmat.dir/DependInfo.cmake Scanning dependencies of target g_rotmat /usr/bin/make -f src/tools/CMakeFiles/g_rotmat.dir/build.make src/tools/CMakeFiles/g_rotmat.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_rotmat.dir/g_rotmat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_rotmat.c Linking C executable g_rotmat cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_rotmat.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_rotmat.dir/g_rotmat.c.o -o g_rotmat libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_rotmat /usr/bin/make -f src/tools/CMakeFiles/g_saltbr.dir/build.make src/tools/CMakeFiles/g_saltbr.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_saltbr.dir/DependInfo.cmake Scanning dependencies of target g_saltbr /usr/bin/make -f src/tools/CMakeFiles/g_saltbr.dir/build.make src/tools/CMakeFiles/g_saltbr.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_saltbr.dir/g_saltbr.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_saltbr.c Linking C executable g_saltbr cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_saltbr.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_saltbr.dir/g_saltbr.c.o -o g_saltbr libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_saltbr /usr/bin/make -f src/tools/CMakeFiles/g_sans.dir/build.make src/tools/CMakeFiles/g_sans.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sans.dir/DependInfo.cmake Scanning dependencies of target g_sans /usr/bin/make -f src/tools/CMakeFiles/g_sans.dir/build.make src/tools/CMakeFiles/g_sans.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_sans.dir/g_sans.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sans.dir/g_sans.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sans.c Linking C executable g_sans cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sans.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sans.dir/g_sans.c.o -o g_sans libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_sans /usr/bin/make -f src/tools/CMakeFiles/g_sas.dir/build.make src/tools/CMakeFiles/g_sas.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sas.dir/DependInfo.cmake Scanning dependencies of target g_sas /usr/bin/make -f src/tools/CMakeFiles/g_sas.dir/build.make src/tools/CMakeFiles/g_sas.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sas.dir/g_sas.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sas.c Linking C executable g_sas cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sas.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sas.dir/g_sas.c.o -o g_sas libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_sas /usr/bin/make -f src/tools/CMakeFiles/g_select.dir/build.make src/tools/CMakeFiles/g_select.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_select.dir/DependInfo.cmake Scanning dependencies of target g_select /usr/bin/make -f src/tools/CMakeFiles/g_select.dir/build.make src/tools/CMakeFiles/g_select.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_select.dir/g_select.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_select.c Linking C executable g_select cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_select.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_select.dir/g_select.c.o -o g_select libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_select /usr/bin/make -f src/tools/CMakeFiles/g_sgangle.dir/build.make src/tools/CMakeFiles/g_sgangle.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sgangle.dir/DependInfo.cmake Scanning dependencies of target g_sgangle /usr/bin/make -f src/tools/CMakeFiles/g_sgangle.dir/build.make src/tools/CMakeFiles/g_sgangle.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sgangle.dir/g_sgangle.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sgangle.c Linking C executable g_sgangle cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sgangle.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sgangle.dir/g_sgangle.c.o -o g_sgangle libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_sgangle /usr/bin/make -f src/tools/CMakeFiles/g_sham.dir/build.make src/tools/CMakeFiles/g_sham.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sham.dir/DependInfo.cmake Scanning dependencies of target g_sham /usr/bin/make -f src/tools/CMakeFiles/g_sham.dir/build.make src/tools/CMakeFiles/g_sham.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sham.dir/g_sham.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sham.c Linking C executable g_sham cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sham.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sham.dir/g_sham.c.o -o g_sham libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_sham /usr/bin/make -f src/tools/CMakeFiles/g_sigeps.dir/build.make src/tools/CMakeFiles/g_sigeps.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sigeps.dir/DependInfo.cmake Scanning dependencies of target g_sigeps /usr/bin/make -f src/tools/CMakeFiles/g_sigeps.dir/build.make src/tools/CMakeFiles/g_sigeps.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sigeps.dir/g_sigeps.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sigeps.c Linking C executable g_sigeps cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sigeps.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sigeps.dir/g_sigeps.c.o -o g_sigeps libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 92%] Built target g_sigeps /usr/bin/make -f src/tools/CMakeFiles/g_sorient.dir/build.make src/tools/CMakeFiles/g_sorient.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_sorient.dir/DependInfo.cmake Scanning dependencies of target g_sorient /usr/bin/make -f src/tools/CMakeFiles/g_sorient.dir/build.make src/tools/CMakeFiles/g_sorient.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 8 [ 93%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_sorient.dir/g_sorient.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_sorient.c Linking C executable g_sorient cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_sorient.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_sorient.dir/g_sorient.c.o -o g_sorient libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 8 [ 93%] Built target g_sorient /usr/bin/make -f src/tools/CMakeFiles/g_spatial.dir/build.make src/tools/CMakeFiles/g_spatial.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_spatial.dir/DependInfo.cmake Scanning dependencies of target g_spatial /usr/bin/make -f src/tools/CMakeFiles/g_spatial.dir/build.make src/tools/CMakeFiles/g_spatial.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_spatial.dir/g_spatial.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_spatial.c Linking C executable g_spatial cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_spatial.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_spatial.dir/g_spatial.c.o -o g_spatial libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_spatial /usr/bin/make -f src/tools/CMakeFiles/g_spol.dir/build.make src/tools/CMakeFiles/g_spol.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_spol.dir/DependInfo.cmake Scanning dependencies of target g_spol /usr/bin/make -f src/tools/CMakeFiles/g_spol.dir/build.make src/tools/CMakeFiles/g_spol.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_spol.dir/g_spol.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_spol.c Linking C executable g_spol cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_spol.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_spol.dir/g_spol.c.o -o g_spol libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_spol /usr/bin/make -f src/tools/CMakeFiles/g_tcaf.dir/build.make src/tools/CMakeFiles/g_tcaf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_tcaf.dir/DependInfo.cmake Scanning dependencies of target g_tcaf /usr/bin/make -f src/tools/CMakeFiles/g_tcaf.dir/build.make src/tools/CMakeFiles/g_tcaf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_tcaf.dir/g_tcaf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_tcaf.c Linking C executable g_tcaf cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_tcaf.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_tcaf.dir/g_tcaf.c.o -o g_tcaf libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_tcaf /usr/bin/make -f src/tools/CMakeFiles/g_traj.dir/build.make src/tools/CMakeFiles/g_traj.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_traj.dir/DependInfo.cmake Scanning dependencies of target g_traj /usr/bin/make -f src/tools/CMakeFiles/g_traj.dir/build.make src/tools/CMakeFiles/g_traj.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_traj.dir/g_traj.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_traj.c Linking C executable g_traj cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_traj.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_traj.dir/g_traj.c.o -o g_traj libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_traj /usr/bin/make -f src/tools/CMakeFiles/g_tune_pme.dir/build.make src/tools/CMakeFiles/g_tune_pme.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_tune_pme.dir/DependInfo.cmake Scanning dependencies of target g_tune_pme /usr/bin/make -f src/tools/CMakeFiles/g_tune_pme.dir/build.make src/tools/CMakeFiles/g_tune_pme.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_tune_pme.c Linking C executable g_tune_pme cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_tune_pme.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o -o g_tune_pme libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_tune_pme /usr/bin/make -f src/tools/CMakeFiles/g_vanhove.dir/build.make src/tools/CMakeFiles/g_vanhove.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_vanhove.dir/DependInfo.cmake Scanning dependencies of target g_vanhove /usr/bin/make -f src/tools/CMakeFiles/g_vanhove.dir/build.make src/tools/CMakeFiles/g_vanhove.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_vanhove.dir/g_vanhove.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_vanhove.c Linking C executable g_vanhove cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_vanhove.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_vanhove.dir/g_vanhove.c.o -o g_vanhove libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_vanhove /usr/bin/make -f src/tools/CMakeFiles/g_velacc.dir/build.make src/tools/CMakeFiles/g_velacc.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_velacc.dir/DependInfo.cmake Scanning dependencies of target g_velacc /usr/bin/make -f src/tools/CMakeFiles/g_velacc.dir/build.make src/tools/CMakeFiles/g_velacc.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_velacc.dir/g_velacc.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_velacc.c Linking C executable g_velacc cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_velacc.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_velacc.dir/g_velacc.c.o -o g_velacc libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_velacc /usr/bin/make -f src/tools/CMakeFiles/g_wham.dir/build.make src/tools/CMakeFiles/g_wham.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_wham.dir/DependInfo.cmake Scanning dependencies of target g_wham /usr/bin/make -f src/tools/CMakeFiles/g_wham.dir/build.make src/tools/CMakeFiles/g_wham.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_wham.dir/g_wham.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_wham.c Linking C executable g_wham cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_wham.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_wham.dir/g_wham.c.o -o g_wham libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 93%] Built target g_wham /usr/bin/make -f src/tools/CMakeFiles/g_wheel.dir/build.make src/tools/CMakeFiles/g_wheel.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/g_wheel.dir/DependInfo.cmake Scanning dependencies of target g_wheel /usr/bin/make -f src/tools/CMakeFiles/g_wheel.dir/build.make src/tools/CMakeFiles/g_wheel.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 9 [ 94%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/g_wheel.dir/g_wheel.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/g_wheel.c Linking C executable g_wheel cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_wheel.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_wheel.dir/g_wheel.c.o -o g_wheel libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/genbox.dir/DependInfo.cmake Scanning dependencies of target genbox /usr/bin/make -f src/tools/CMakeFiles/genbox.dir/build.make src/tools/CMakeFiles/genbox.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/genbox.dir/genbox.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/genbox.c Linking C executable genbox cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/genbox.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/genbox.dir/genbox.c.o -o genbox libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target genbox /usr/bin/make -f src/tools/CMakeFiles/genconf.dir/build.make src/tools/CMakeFiles/genconf.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/genconf.dir/DependInfo.cmake Scanning dependencies of target genconf /usr/bin/make -f src/tools/CMakeFiles/genconf.dir/build.make src/tools/CMakeFiles/genconf.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/genconf.dir/genconf.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/genconf.c Linking C executable genconf cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/genconf.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/genconf.dir/genconf.c.o -o genconf libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/genion.dir/DependInfo.cmake Scanning dependencies of target genion /usr/bin/make -f src/tools/CMakeFiles/genion.dir/build.make src/tools/CMakeFiles/genion.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/genion.dir/genion.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/genion.c Linking C executable genion cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/genion.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/genion.dir/genion.c.o -o genion libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so 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/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/genrestr.dir/DependInfo.cmake Scanning dependencies of target genrestr /usr/bin/make -f src/tools/CMakeFiles/genrestr.dir/build.make src/tools/CMakeFiles/genrestr.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/genrestr.dir/genrestr.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/genrestr.c Linking C executable genrestr cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/genrestr.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/genrestr.dir/genrestr.c.o -o genrestr libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target genrestr /usr/bin/make -f src/tools/CMakeFiles/make_edi.dir/build.make src/tools/CMakeFiles/make_edi.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/make_edi.dir/DependInfo.cmake Scanning dependencies of target make_edi /usr/bin/make -f src/tools/CMakeFiles/make_edi.dir/build.make src/tools/CMakeFiles/make_edi.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/make_edi.dir/make_edi.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/make_edi.c Linking C executable make_edi cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/make_edi.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/make_edi.dir/make_edi.c.o -o make_edi libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target make_edi /usr/bin/make -f src/tools/CMakeFiles/make_ndx.dir/build.make src/tools/CMakeFiles/make_ndx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/make_ndx.dir/DependInfo.cmake Scanning dependencies of target make_ndx /usr/bin/make -f src/tools/CMakeFiles/make_ndx.dir/build.make src/tools/CMakeFiles/make_ndx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/make_ndx.dir/make_ndx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/make_ndx.c Linking C executable make_ndx cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/make_ndx.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/make_ndx.dir/make_ndx.c.o -o make_ndx libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target make_ndx /usr/bin/make -f src/tools/CMakeFiles/mk_angndx.dir/build.make src/tools/CMakeFiles/mk_angndx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/mk_angndx.dir/DependInfo.cmake Scanning dependencies of target mk_angndx /usr/bin/make -f src/tools/CMakeFiles/mk_angndx.dir/build.make src/tools/CMakeFiles/mk_angndx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/mk_angndx.dir/mk_angndx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/mk_angndx.c Linking C executable mk_angndx cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mk_angndx.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/mk_angndx.dir/mk_angndx.c.o -o mk_angndx libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target mk_angndx /usr/bin/make -f src/tools/CMakeFiles/trjcat.dir/build.make src/tools/CMakeFiles/trjcat.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/trjcat.dir/DependInfo.cmake Scanning dependencies of target trjcat /usr/bin/make -f src/tools/CMakeFiles/trjcat.dir/build.make src/tools/CMakeFiles/trjcat.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/trjcat.dir/trjcat.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/trjcat.c Linking C executable trjcat cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/trjcat.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/trjcat.dir/trjcat.c.o -o trjcat libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target trjcat /usr/bin/make -f src/tools/CMakeFiles/trjconv.dir/build.make src/tools/CMakeFiles/trjconv.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/trjconv.dir/DependInfo.cmake Scanning dependencies of target trjconv /usr/bin/make -f src/tools/CMakeFiles/trjconv.dir/build.make src/tools/CMakeFiles/trjconv.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/trjconv.dir/trjconv.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/trjconv.c Linking C executable trjconv cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/trjconv.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/trjconv.dir/trjconv.c.o -o trjconv libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target trjconv /usr/bin/make -f src/tools/CMakeFiles/trjorder.dir/build.make src/tools/CMakeFiles/trjorder.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/trjorder.dir/DependInfo.cmake Scanning dependencies of target trjorder /usr/bin/make -f src/tools/CMakeFiles/trjorder.dir/build.make src/tools/CMakeFiles/trjorder.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/trjorder.dir/trjorder.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/trjorder.c Linking C executable trjorder cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/trjorder.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/trjorder.dir/trjorder.c.o -o trjorder libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 94%] Built target trjorder /usr/bin/make -f src/tools/CMakeFiles/xpm2ps.dir/build.make src/tools/CMakeFiles/xpm2ps.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/CMakeFiles/xpm2ps.dir/DependInfo.cmake Scanning dependencies of target xpm2ps /usr/bin/make -f src/tools/CMakeFiles/xpm2ps.dir/build.make src/tools/CMakeFiles/xpm2ps.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 100 [ 95%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -o CMakeFiles/xpm2ps.dir/xpm2ps.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools/xpm2ps.c Linking C executable xpm2ps cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xpm2ps.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/xpm2ps.dir/xpm2ps.c.o -o xpm2ps libgmxana.so.8 ../mdlib/libmd.so.8 ../gmxlib/libgmx.so.8 -fopenmp /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/tools:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/mdlib:/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 100 [ 95%] Built target xpm2ps /usr/bin/make -f src/ngmx/CMakeFiles/g_xrama.dir/build.make src/ngmx/CMakeFiles/g_xrama.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/CMakeFiles/g_xrama.dir/DependInfo.cmake Scanning dependencies of target g_xrama /usr/bin/make -f src/ngmx/CMakeFiles/g_xrama.dir/build.make src/ngmx/CMakeFiles/g_xrama.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/g_xrama.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/g_xrama.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/g_xrama.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/xutil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/xutil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xutil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/xmb.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/xmb.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xmb.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/x11.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/x11.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/x11.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/xdlghi.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/xdlghi.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlghi.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 95%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/fgrid.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer 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-I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/xdlgitem.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlgitem.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/popup.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/popup.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/popup.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/pulldown.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/pulldown.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/pulldown.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/xdlg.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/xdlg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/manager.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/manager.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/manager.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/buttons.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/buttons.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/buttons.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/nmol.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/nmol.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/nmol.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 96%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/nleg.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/nleg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/nleg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 11 [ 97%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/dialogs.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/dialogs.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/dialogs.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 97%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/logo.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/logo.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/logo.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 97%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/filter.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/filter.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/filter.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 97%] Building C object src/ngmx/CMakeFiles/g_xrama.dir/molps.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/g_xrama.dir/molps.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/molps.c Linking C executable g_xrama cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/g_xrama.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/g_xrama.dir/g_xrama.c.o CMakeFiles/g_xrama.dir/xutil.c.o CMakeFiles/g_xrama.dir/xmb.c.o CMakeFiles/g_xrama.dir/x11.c.o CMakeFiles/g_xrama.dir/xdlghi.c.o CMakeFiles/g_xrama.dir/fgrid.c.o CMakeFiles/g_xrama.dir/xdlgitem.c.o CMakeFiles/g_xrama.dir/popup.c.o CMakeFiles/g_xrama.dir/pulldown.c.o CMakeFiles/g_xrama.dir/xdlg.c.o CMakeFiles/g_xrama.dir/manager.c.o CMakeFiles/g_xrama.dir/buttons.c.o CMakeFiles/g_xrama.dir/nmol.c.o CMakeFiles/g_xrama.dir/nleg.c.o CMakeFiles/g_xrama.dir/dialogs.c.o CMakeFiles/g_xrama.dir/logo.c.o CMakeFiles/g_xrama.dir/filter.c.o CMakeFiles/g_xrama.dir/molps.c.o -o g_xrama ../gmxlib/libgmx.so.8 /usr/local/lib/libX11.so /usr/local/lib/libXext.so /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -fopenmp -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 10 11 [ 97%] Built target g_xrama /usr/bin/make -f src/ngmx/CMakeFiles/ngmx.dir/build.make src/ngmx/CMakeFiles/ngmx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/CMakeFiles/ngmx.dir/DependInfo.cmake Scanning dependencies of target ngmx /usr/bin/make -f src/ngmx/CMakeFiles/ngmx.dir/build.make src/ngmx/CMakeFiles/ngmx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 97 [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/ngmx.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/ngmx.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/ngmx.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/xutil.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/xutil.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xutil.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/xmb.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/xmb.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xmb.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/x11.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/x11.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/x11.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/xdlghi.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/xdlghi.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlghi.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/fgrid.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/fgrid.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/fgrid.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/xdlgitem.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/xdlgitem.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlgitem.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/popup.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/popup.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/popup.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 98%] Building C object src/ngmx/CMakeFiles/ngmx.dir/pulldown.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/pulldown.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/pulldown.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 98 [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/xdlg.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/xdlg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/xdlg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/manager.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/manager.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/manager.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/buttons.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/buttons.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/buttons.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/nmol.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/nmol.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/nmol.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/nleg.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/nleg.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/nleg.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/dialogs.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/dialogs.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/dialogs.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/logo.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/logo.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/logo.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/filter.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/filter.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/filter.c /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [100%] Building C object src/ngmx/CMakeFiles/ngmx.dir/molps.c.o cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/bin/cc -DHAVE_CONFIG_H -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -I/usr/local/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/include -I/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx -o CMakeFiles/ngmx.dir/molps.c.o -c /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx/molps.c Linking C executable ngmx cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/ngmx && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ngmx.dir/link.txt --verbose=1 /usr/bin/cc -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin CMakeFiles/ngmx.dir/ngmx.c.o CMakeFiles/ngmx.dir/xutil.c.o CMakeFiles/ngmx.dir/xmb.c.o CMakeFiles/ngmx.dir/x11.c.o CMakeFiles/ngmx.dir/xdlghi.c.o CMakeFiles/ngmx.dir/fgrid.c.o CMakeFiles/ngmx.dir/xdlgitem.c.o CMakeFiles/ngmx.dir/popup.c.o CMakeFiles/ngmx.dir/pulldown.c.o CMakeFiles/ngmx.dir/xdlg.c.o CMakeFiles/ngmx.dir/manager.c.o CMakeFiles/ngmx.dir/buttons.c.o CMakeFiles/ngmx.dir/nmol.c.o CMakeFiles/ngmx.dir/nleg.c.o CMakeFiles/ngmx.dir/dialogs.c.o CMakeFiles/ngmx.dir/logo.c.o CMakeFiles/ngmx.dir/filter.c.o CMakeFiles/ngmx.dir/molps.c.o -o ngmx ../gmxlib/libgmx.so.8 /usr/local/lib/libX11.so /usr/local/lib/libXext.so /usr/local/lib/libfftw3f.so /usr/local/lib/libblas.so /usr/local/lib/liblapack.so -lm -pthread -fopenmp -Wl,-rpath,/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib:/usr/local/lib: /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 97 98 [100%] Built target ngmx /usr/local/bin/cmake -E cmake_progress_start /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 0 ===> Staging for gromacs-4.6.5_2 ===> gromacs-4.6.5_2 depends on executable: gfortran47 - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gromacs-4.6.5_2 depends on file: /usr/local/bin/perl5.16.3 - found ===> Generating temporary packing list /usr/local/bin/cmake -H/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 -B/obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f share/template/CMakeFiles/gromacs_include_links.dir/build.make share/template/CMakeFiles/gromacs_include_links.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/share/template/CMakeFiles/gromacs_include_links.dir/DependInfo.cmake /usr/bin/make -f share/template/CMakeFiles/gromacs_include_links.dir/build.make share/template/CMakeFiles/gromacs_include_links.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles [ 0%] Built target gromacs_include_links /usr/bin/make -f src/gmxlib/CMakeFiles/gmx.dir/build.make src/gmxlib/CMakeFiles/gmx.dir/depend cd /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5 /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/src/gmxlib/CMakeFiles/gmx.dir/DependInfo.cmake /usr/bin/make -f src/gmxlib/CMakeFiles/gmx.dir/build.make src/gmxlib/CMakeFiles/gmx.dir/build /usr/local/bin/cmake -E cmake_progress_report /obj/buildshare/ports/355755/science/gromacs/work/gromacs-4.6.5/CMakeFiles 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 [ 41%] Built target gmx /usr/bin/make -f 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Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./sparsematrix.h -- Up-to-date: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_header_config.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./chargegroup.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./string2.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./maths.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./ebin.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./centerofmass.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./coulomb.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./pdbio.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./partdec.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./rbin.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./trajana.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_ga2la.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_parallel_3dfft.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./vcm.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./mdatoms.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./pull_rotation.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/threads.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/mutex.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/hwinfo.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/event.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/lock.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/barrier.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic -- Installing: 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/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic/gcc_intrinsics.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic/gcc_x86.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic/derived.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic/cycles.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/atomic/gcc_spinlock.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/system_error.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/list.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/wait.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/tmpi.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/visibility.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/numa_malloc.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/collective.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./thread_mpi/mpi_bindings.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./inputrec.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./split.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./ns.h -- Installing: 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-- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./matio.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./nrama.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./nrjac.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_x86_sse2.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gpp_atomtype.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_simd4_macros.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./filenm.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./writeps.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./main.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./mtop_util.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./poscalc.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./strdb.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_avx_single.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./md_support.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./pme.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./rmpbc.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./xvgr.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./random.h -- Installing: 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/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./trnio.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_math_x86_avx_128_fma_double.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./nrnb.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./tables.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./calcmu.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./visibility.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./perf_est.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./mpelogging.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./sysstuff.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./md_logging.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./mdrun.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./invblock.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./nbsearch.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_wallcycle.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./force.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./displacement.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_simd4_ref.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./mvdata.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./indexutil.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./selmethod.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./selparam.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_cyclecounter.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_fatal_collective.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./hackblock.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./histogram.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./shift.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gpp_nextnb.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_system_xdr.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmxcpp.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./domdec.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./grompp.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_math_x86_avx_256_single.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./gmx_fft.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/include/gromacs/./tgroup.h -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man7/gromacs.7 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmx.so.8 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmx.so -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmx.so.8" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/libdata/pkgconfig/libgmx.pc -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libmd.so.8 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libmd.so -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libmd.so.8" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/libdata/pkgconfig/libmd.pc -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/grompp.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/tpbconv.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/pdb2gmx.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_protonate.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/gmxdump.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_x2top.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/gmxcheck.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/mdrun.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/grompp -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/grompp" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/tpbconv -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/tpbconv" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/pdb2gmx -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/pdb2gmx" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_protonate -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_protonate" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/gmxdump -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/gmxdump" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_x2top -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_x2top" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/gmxcheck -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/gmxcheck" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_luck -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_luck" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/mdrun -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/mdrun" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxpreprocess.so.8 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxpreprocess.so -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxpreprocess.so.8" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/libdata/pkgconfig/libgmxpreprocess.pc -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/do_dssp.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/do_dssp -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/do_dssp" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/editconf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/editconf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/editconf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/eneconv.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/eneconv -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/eneconv" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/genbox.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genbox -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genbox" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/genconf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genconf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genconf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/genrestr.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genrestr -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genrestr" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_nmtraj.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmtraj -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmtraj" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/make_ndx.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/make_ndx -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/make_ndx" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/mk_angndx.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/mk_angndx -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/mk_angndx" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/trjcat.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjcat -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjcat" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/trjconv.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjconv -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjconv" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/trjorder.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjorder -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/trjorder" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_wheel.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_wheel -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_wheel" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/xpm2ps.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/xpm2ps -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/xpm2ps" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/genion.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genion -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/genion" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_anadock.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_anadock -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_anadock" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/make_edi.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/make_edi -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/make_edi" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_analyze.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_analyze -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_analyze" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_anaeig.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_anaeig -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_anaeig" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_angle.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_angle -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_angle" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_bond.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bond -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bond" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_bundle.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bundle -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bundle" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_chi.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_chi -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_chi" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_cluster.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_cluster -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_cluster" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_confrms.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_confrms -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_confrms" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_covar.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_covar -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_covar" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_current.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_current -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_current" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_density.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_density -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_density" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_densmap.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_densmap -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_densmap" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dielectric.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dielectric -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dielectric" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_helixorient.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_helixorient -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_helixorient" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_principal.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_principal -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_principal" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dipoles.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dipoles -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dipoles" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_disre.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_disre -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_disre" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dist.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dist -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dist" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dyndom.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dyndom -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dyndom" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_enemat.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_enemat -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_enemat" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_energy.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_energy -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_energy" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_lie.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_lie -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_lie" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_filter.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_filter -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_filter" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_gyrate.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_gyrate -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_gyrate" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_h2order.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_h2order -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_h2order" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_hbond.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_hbond -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_hbond" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_helix.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_helix -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_helix" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_mindist.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_mindist -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_mindist" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_msd.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_msd -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_msd" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_morph.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_morph -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_morph" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_nmeig.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmeig -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmeig" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_nmens.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmens -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_nmens" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_order.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_order -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_order" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_kinetics.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_kinetics -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_kinetics" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_polystat.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_polystat -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_polystat" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_potential.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_potential -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_potential" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rama.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rama -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rama" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rdf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rdf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rdf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rms.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rms -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rms" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rmsf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rmsf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rmsf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rotacf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rotacf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rotacf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_saltbr.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_saltbr -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_saltbr" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sas.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sas -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sas" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_select.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_select -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_select" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sgangle.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sgangle -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sgangle" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sham.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sham -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sham" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sorient.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sorient -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sorient" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_spol.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_spol -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_spol" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_spatial.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_spatial -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_spatial" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_tcaf.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_tcaf -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_tcaf" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_traj.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_traj -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_traj" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_tune_pme.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_tune_pme -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_tune_pme" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_vanhove.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_vanhove -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_vanhove" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_velacc.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_velacc -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_velacc" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_clustsize.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_clustsize -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_clustsize" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_mdmat.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_mdmat -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_mdmat" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_wham.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_wham -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_wham" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sigeps.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sigeps -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sigeps" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_bar.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bar -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_bar" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_membed.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_membed -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_membed" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_pme_error.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_pme_error -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_pme_error" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rmsdist.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rmsdist -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rmsdist" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_rotmat.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rotmat -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_rotmat" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_options -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_options" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dos.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dos -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dos" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_hydorder.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_hydorder -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_hydorder" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_densorder.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_densorder -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_densorder" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_dyecoupl.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dyecoupl -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_dyecoupl" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_sans.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sans -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_sans" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxana.so.8 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxana.so -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/lib/libgmxana.so.8" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/libdata/pkgconfig/libgmxana.pc -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/ngmx.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/man/man1/g_xrama.1 -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/ngmx -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/ngmx" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_xrama -- Set runtime path of "/obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/g_xrama" to "$ORIGIN/../lib:/usr/local/lib" -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/GMXRC -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/GMXRC.bash -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/GMXRC.zsh -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/GMXRC.csh -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/completion.bash -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/completion.zsh -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/completion.csh -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/demux.pl -- Installing: /obj/buildshare/ports/355755/science/gromacs/work/stage/usr/local/bin/xplor2gmx.pl ====> Compressing man pages (compress-man) ===> Installing for gromacs-4.6.5_2 ===> Checking if science/gromacs already installed ===> Registering installation for gromacs-4.6.5_2 Installing gromacs-4.6.5_2... done Make package ===> Building package for gromacs-4.6.5_2 slot2: removed