Building ghmm-0.7.0b.txz (origin /buildshare/ports/355755/science/ghmm) for powerpc-10-0 on XXX
slot1: created
x distfiles/
x distfiles/ghmm-0.7.0b.tar.gz
x packages/
x packages/libtool-2.4.2_3.txz
x packages/pkg-1.2.7_2.txz
ELF ldconfig path: /lib /usr/lib /usr/lib/compat
Make depends
===>   ghmm-0.7.0b depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg
===>   Installing existing package /packages/pkg-1.2.7_2.txz
Installing pkg-1.2.7_2... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of ghmm-0.7.0b
===>   ghmm-0.7.0b depends on package: libtool>=2.4 - not found
===>    Verifying install for libtool>=2.4 in /buildshare/ports/355755/devel/libtool
===>   Installing existing package /packages/libtool-2.4.2_3.txz
Installing libtool-2.4.2_3... done
===>   Returning to build of ghmm-0.7.0b
Make install
===>   ghmm-0.7.0b depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by ghmm-0.7.0b for building
===>  Extracting for ghmm-0.7.0b
=> SHA256 Checksum OK for ghmm-0.7.0b.tar.gz.
===>  Patching for ghmm-0.7.0b
===>  Applying FreeBSD patches for ghmm-0.7.0b
===>   ghmm-0.7.0b depends on package: libtool>=2.4 - found
===>  Configuring for ghmm-0.7.0b
===>   FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/acinclude.m4
===>   FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/aclocal.m4
===>   FreeBSD 10 autotools fix applied to /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/configure
configure: loading site script /buildshare/ports/355755/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
checking whether build environment is sane... yes
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking for gcc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking dependency style of cc... (cached) gcc3
checking how to run the C preprocessor... cpp
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking dependency style of c++... (cached) gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ranlib... ranlib
checking build system type... powerpc-portbld-freebsd11.0
checking host system type... powerpc-portbld-freebsd11.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for g77... no
checking for f77... no
checking for xlf... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking the maximum length of command line arguments... (cached) 262144
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... (cached) ranlib
checking for strip... strip
checking if cc static flag  works... yes
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd11.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC
checking if c++ PIC flag -fPIC works... yes
checking if c++ supports -c -o file.o... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd11.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
appending configuration tag "F77" to libtool
checking for gawk... (cached) /usr/bin/awk
checking for rm... /bin/rm
checking for doc++... no
checking for latex... no
checking for dvips... no
checking for expect... no
checking for runtest... no
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether the compiler implements namespaces... (cached) yes
checking cstdio usability... yes
checking cstdio presence... yes
checking for cstdio... yes
checking cstdlib usability... yes
checking cstdlib presence... yes
checking for cstdlib... yes
checking cstring usability... yes
checking cstring presence... yes
checking for cstring... yes
checking cerrno usability... yes
checking cerrno presence... yes
checking for cerrno... yes
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cstdarg usability... yes
checking cstdarg presence... yes
checking for cstdarg... yes
checking for xmlio-config... no
configure: WARNING: "no xml support"
checking for pthread_join in -lpthread... yes
checking for ANSI C header files... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking whether struct tm is in sys/time.h or time.h... time.h
configure: WARNING: "not using gsl"
checking for cos in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating ghmm/Makefile
config.status: creating tools/Makefile
config.status: creating tests/Makefile
config.status: creating tests/data/Makefile
config.status: creating doc/docu.dxx
config.status: creating tools/ghmm-config
config.status: creating VisualC/Makefile
config.status: creating VisualC/coin_toss_test/Makefile
config.status: creating VisualC/coin_toss_test_pp/Makefile
config.status: creating VisualC/ghmm/Makefile
config.status: creating VisualC/ghmmpp/Makefile
config.status: creating config.h
config.status: executing depfiles commands
===>  Building for ghmm-0.7.0b
/usr/bin/make  all-recursive
Making all in ghmm
Making all in .
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT foba.lo -MD -MP -MF ".deps/foba.Tpo" -c -o foba.lo foba.c;  then mv -f ".deps/foba.Tpo" ".deps/foba.Plo"; else rm -f ".deps/foba.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c  -fPIC -DPIC -o .libs/foba.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c -o foba.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT matrix.lo -MD -MP -MF ".deps/matrix.Tpo" -c -o matrix.lo matrix.c;  then mv -f ".deps/matrix.Tpo" ".deps/matrix.Plo"; else rm -f ".deps/matrix.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c  -fPIC -DPIC -o .libs/matrix.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -o matrix.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT model.lo -MD -MP -MF ".deps/model.Tpo" -c -o model.lo model.c;  then mv -f ".deps/model.Tpo" ".deps/model.Plo"; else rm -f ".deps/model.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c  -fPIC -DPIC -o .libs/model.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -o model.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT modelutil.lo -MD -MP -MF ".deps/modelutil.Tpo" -c -o modelutil.lo modelutil.c;  then mv -f ".deps/modelutil.Tpo" ".deps/modelutil.Plo"; else rm -f ".deps/modelutil.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c  -fPIC -DPIC -o .libs/modelutil.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c -o modelutil.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT cluster.lo -MD -MP -MF ".deps/cluster.Tpo" -c -o cluster.lo cluster.c;  then mv -f ".deps/cluster.Tpo" ".deps/cluster.Plo"; else rm -f ".deps/cluster.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c  -fPIC -DPIC -o .libs/cluster.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c -o cluster.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT scluster.lo -MD -MP -MF ".deps/scluster.Tpo" -c -o scluster.lo scluster.c;  then mv -f ".deps/scluster.Tpo" ".deps/scluster.Plo"; else rm -f ".deps/scluster.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c  -fPIC -DPIC -o .libs/scluster.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c -o scluster.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT root_finder.lo -MD -MP -MF ".deps/root_finder.Tpo" -c -o root_finder.lo root_finder.c;  then mv -f ".deps/root_finder.Tpo" ".deps/root_finder.Plo"; else rm -f ".deps/root_finder.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c  -fPIC -DPIC -o .libs/root_finder.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c -o root_finder.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT reestimate.lo -MD -MP -MF ".deps/reestimate.Tpo" -c -o reestimate.lo reestimate.c;  then mv -f ".deps/reestimate.Tpo" ".deps/reestimate.Plo"; else rm -f ".deps/reestimate.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c  -fPIC -DPIC -o .libs/reestimate.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c -o reestimate.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT randvar.lo -MD -MP -MF ".deps/randvar.Tpo" -c -o randvar.lo randvar.c;  then mv -f ".deps/randvar.Tpo" ".deps/randvar.Plo"; else rm -f ".deps/randvar.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c  -fPIC -DPIC -o .libs/randvar.o
randvar.c:123:2: warning: #warning "PHI_DATA_FILE deprecated!"
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c -o randvar.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT rng.lo -MD -MP -MF ".deps/rng.Tpo" -c -o rng.lo rng.c;  then mv -f ".deps/rng.Tpo" ".deps/rng.Plo"; else rm -f ".deps/rng.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c  -fPIC -DPIC -o .libs/rng.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c -o rng.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sequence.lo -MD -MP -MF ".deps/sequence.Tpo" -c -o sequence.lo sequence.c;  then mv -f ".deps/sequence.Tpo" ".deps/sequence.Plo"; else rm -f ".deps/sequence.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c  -fPIC -DPIC -o .libs/sequence.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -o sequence.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT vector.lo -MD -MP -MF ".deps/vector.Tpo" -c -o vector.lo vector.c;  then mv -f ".deps/vector.Tpo" ".deps/vector.Plo"; else rm -f ".deps/vector.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c  -fPIC -DPIC -o .libs/vector.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -o vector.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT viterbi.lo -MD -MP -MF ".deps/viterbi.Tpo" -c -o viterbi.lo viterbi.c;  then mv -f ".deps/viterbi.Tpo" ".deps/viterbi.Plo"; else rm -f ".deps/viterbi.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c  -fPIC -DPIC -o .libs/viterbi.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c -o viterbi.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sfoba.lo -MD -MP -MF ".deps/sfoba.Tpo" -c -o sfoba.lo sfoba.c;  then mv -f ".deps/sfoba.Tpo" ".deps/sfoba.Plo"; else rm -f ".deps/sfoba.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c  -fPIC -DPIC -o .libs/sfoba.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c -o sfoba.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sviterbi.lo -MD -MP -MF ".deps/sviterbi.Tpo" -c -o sviterbi.lo sviterbi.c;  then mv -f ".deps/sviterbi.Tpo" ".deps/sviterbi.Plo"; else rm -f ".deps/sviterbi.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c  -fPIC -DPIC -o .libs/sviterbi.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c -o sviterbi.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT smodel.lo -MD -MP -MF ".deps/smodel.Tpo" -c -o smodel.lo smodel.c;  then mv -f ".deps/smodel.Tpo" ".deps/smodel.Plo"; else rm -f ".deps/smodel.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c  -fPIC -DPIC -o .libs/smodel.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c -o smodel.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sdmodel.lo -MD -MP -MF ".deps/sdmodel.Tpo" -c -o sdmodel.lo sdmodel.c;  then mv -f ".deps/sdmodel.Tpo" ".deps/sdmodel.Plo"; else rm -f ".deps/sdmodel.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c  -fPIC -DPIC -o .libs/sdmodel.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c -o sdmodel.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sdviterbi.lo -MD -MP -MF ".deps/sdviterbi.Tpo" -c -o sdviterbi.lo sdviterbi.c;  then mv -f ".deps/sdviterbi.Tpo" ".deps/sdviterbi.Plo"; else rm -f ".deps/sdviterbi.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c  -fPIC -DPIC -o .libs/sdviterbi.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c -o sdviterbi.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sdfoba.lo -MD -MP -MF ".deps/sdfoba.Tpo" -c -o sdfoba.lo sdfoba.c;  then mv -f ".deps/sdfoba.Tpo" ".deps/sdfoba.Plo"; else rm -f ".deps/sdfoba.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c  -fPIC -DPIC -o .libs/sdfoba.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c -o sdfoba.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sreestimate.lo -MD -MP -MF ".deps/sreestimate.Tpo" -c -o sreestimate.lo sreestimate.c;  then mv -f ".deps/sreestimate.Tpo" ".deps/sreestimate.Plo"; else rm -f ".deps/sreestimate.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c  -fPIC -DPIC -o .libs/sreestimate.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c -o sreestimate.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sgenerate.lo -MD -MP -MF ".deps/sgenerate.Tpo" -c -o sgenerate.lo sgenerate.c;  then mv -f ".deps/sgenerate.Tpo" ".deps/sgenerate.Plo"; else rm -f ".deps/sgenerate.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c  -fPIC -DPIC -o .libs/sgenerate.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c -o sgenerate.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT smixturehmm.lo -MD -MP -MF ".deps/smixturehmm.Tpo" -c -o smixturehmm.lo smixturehmm.c;  then mv -f ".deps/smixturehmm.Tpo" ".deps/smixturehmm.Plo"; else rm -f ".deps/smixturehmm.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c  -fPIC -DPIC -o .libs/smixturehmm.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c -o smixturehmm.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT mes.lo -MD -MP -MF ".deps/mes.Tpo" -c -o mes.lo mes.c;  then mv -f ".deps/mes.Tpo" ".deps/mes.Plo"; else rm -f ".deps/mes.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c  -fPIC -DPIC -o .libs/mes.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c -o mes.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT mprintf.lo -MD -MP -MF ".deps/mprintf.Tpo" -c -o mprintf.lo mprintf.c;  then mv -f ".deps/mprintf.Tpo" ".deps/mprintf.Plo"; else rm -f ".deps/mprintf.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c  -fPIC -DPIC -o .libs/mprintf.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c -o mprintf.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT scanner.lo -MD -MP -MF ".deps/scanner.Tpo" -c -o scanner.lo scanner.c;  then mv -f ".deps/scanner.Tpo" ".deps/scanner.Plo"; else rm -f ".deps/scanner.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c  -fPIC -DPIC -o .libs/scanner.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c -o scanner.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT gauss_tail.lo -MD -MP -MF ".deps/gauss_tail.Tpo" -c -o gauss_tail.lo gauss_tail.c;  then mv -f ".deps/gauss_tail.Tpo" ".deps/gauss_tail.Plo"; else rm -f ".deps/gauss_tail.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c  -fPIC -DPIC -o .libs/gauss_tail.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c -o gauss_tail.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT smap_classify.lo -MD -MP -MF ".deps/smap_classify.Tpo" -c -o smap_classify.lo smap_classify.c;  then mv -f ".deps/smap_classify.Tpo" ".deps/smap_classify.Plo"; else rm -f ".deps/smap_classify.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c  -fPIC -DPIC -o .libs/smap_classify.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c -o smap_classify.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT kbestbasics.lo -MD -MP -MF ".deps/kbestbasics.Tpo" -c -o kbestbasics.lo kbestbasics.c;  then mv -f ".deps/kbestbasics.Tpo" ".deps/kbestbasics.Plo"; else rm -f ".deps/kbestbasics.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT kbestbasics.lo -MD -MP -MF .deps/kbestbasics.Tpo -c kbestbasics.c  -fPIC -DPIC -o .libs/kbestbasics.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT kbestbasics.lo -MD -MP -MF .deps/kbestbasics.Tpo -c kbestbasics.c -o kbestbasics.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT kbest.lo -MD -MP -MF ".deps/kbest.Tpo" -c -o kbest.lo kbest.c;  then mv -f ".deps/kbest.Tpo" ".deps/kbest.Plo"; else rm -f ".deps/kbest.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c  -fPIC -DPIC -o .libs/kbest.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c -o kbest.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT gradescent.lo -MD -MP -MF ".deps/gradescent.Tpo" -c -o gradescent.lo gradescent.c;  then mv -f ".deps/gradescent.Tpo" ".deps/gradescent.Plo"; else rm -f ".deps/gradescent.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c  -fPIC -DPIC -o .libs/gradescent.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c -o gradescent.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT discrime.lo -MD -MP -MF ".deps/discrime.Tpo" -c -o discrime.lo discrime.c;  then mv -f ".deps/discrime.Tpo" ".deps/discrime.Plo"; else rm -f ".deps/discrime.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c  -fPIC -DPIC -o .libs/discrime.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c -o discrime.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT psequence.lo -MD -MP -MF ".deps/psequence.Tpo" -c -o psequence.lo psequence.c;  then mv -f ".deps/psequence.Tpo" ".deps/psequence.Plo"; else rm -f ".deps/psequence.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c  -fPIC -DPIC -o .libs/psequence.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c -o psequence.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT pmodel.lo -MD -MP -MF ".deps/pmodel.Tpo" -c -o pmodel.lo pmodel.c;  then mv -f ".deps/pmodel.Tpo" ".deps/pmodel.Plo"; else rm -f ".deps/pmodel.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c  -fPIC -DPIC -o .libs/pmodel.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c -o pmodel.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT linkedlist.lo -MD -MP -MF ".deps/linkedlist.Tpo" -c -o linkedlist.lo linkedlist.c;  then mv -f ".deps/linkedlist.Tpo" ".deps/linkedlist.Plo"; else rm -f ".deps/linkedlist.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c linkedlist.c  -fPIC -DPIC -o .libs/linkedlist.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c linkedlist.c -o linkedlist.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT pviterbi.lo -MD -MP -MF ".deps/pviterbi.Tpo" -c -o pviterbi.lo pviterbi.c;  then mv -f ".deps/pviterbi.Tpo" ".deps/pviterbi.Plo"; else rm -f ".deps/pviterbi.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c  -fPIC -DPIC -o .libs/pviterbi.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c -o pviterbi.o >/dev/null 2>&1
if /bin/sh /usr/local/bin/libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H  -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT pviterbi_propagate.lo -MD -MP -MF ".deps/pviterbi_propagate.Tpo" -c -o pviterbi_propagate.lo pviterbi_propagate.c;  then mv -f ".deps/pviterbi_propagate.Tpo" ".deps/pviterbi_propagate.Plo"; else rm -f ".deps/pviterbi_propagate.Tpo"; exit 1; fi
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c  -fPIC -DPIC -o .libs/pviterbi_propagate.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -pipe -fno-strict-aliasing -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c -o pviterbi_propagate.o >/dev/null 2>&1
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc  -O2 -pipe -fno-strict-aliasing    -o libghmm.la -rpath /usr/local/lib -version-info 0:7:0 foba.lo matrix.lo model.lo modelutil.lo  cluster.lo scluster.lo root_finder.lo reestimate.lo randvar.lo  rng.lo sequence.lo vector.lo viterbi.lo sfoba.lo sviterbi.lo  smodel.lo sdmodel.lo sdviterbi.lo sdfoba.lo sreestimate.lo  sgenerate.lo smixturehmm.lo mes.lo mprintf.lo scanner.lo  gauss_tail.lo smap_classify.lo kbestbasics.lo kbest.lo  gradescent.lo discrime.lo psequence.lo pmodel.lo linkedlist.lo  pviterbi.lo pviterbi_propagate.lo  -lm -lpthread
libtool: link: cc -shared  -fPIC -DPIC  .libs/foba.o .libs/matrix.o .libs/model.o .libs/modelutil.o .libs/cluster.o .libs/scluster.o .libs/root_finder.o .libs/reestimate.o .libs/randvar.o .libs/rng.o .libs/sequence.o .libs/vector.o .libs/viterbi.o .libs/sfoba.o .libs/sviterbi.o .libs/smodel.o .libs/sdmodel.o .libs/sdviterbi.o .libs/sdfoba.o .libs/sreestimate.o .libs/sgenerate.o .libs/smixturehmm.o .libs/mes.o .libs/mprintf.o .libs/scanner.o .libs/gauss_tail.o .libs/smap_classify.o .libs/kbestbasics.o .libs/kbest.o .libs/gradescent.o .libs/discrime.o .libs/psequence.o .libs/pmodel.o .libs/linkedlist.o .libs/pviterbi.o .libs/pviterbi_propagate.o   -lm -lpthread  -O2   -Wl,-soname -Wl,libghmm.so.0 -o .libs/libghmm.so.0
libtool: link: (cd ".libs" && rm -f "libghmm.so" && ln -s "libghmm.so.0" "libghmm.so")
libtool: link: (cd ".libs" && rm -f "libghmm.so" && ln -s "libghmm.so.0" "libghmm.so")
libtool: link: ar cru .libs/libghmm.a  foba.o matrix.o model.o modelutil.o cluster.o scluster.o root_finder.o reestimate.o randvar.o rng.o sequence.o vector.o viterbi.o sfoba.o sviterbi.o smodel.o sdmodel.o sdviterbi.o sdfoba.o sreestimate.o sgenerate.o smixturehmm.o mes.o mprintf.o scanner.o gauss_tail.o smap_classify.o kbestbasics.o kbest.o gradescent.o discrime.o psequence.o pmodel.o linkedlist.o pviterbi.o pviterbi_propagate.o
libtool: link: ranlib .libs/libghmm.a
libtool: link: ( cd ".libs" && rm -f "libghmm.la" && ln -s "../libghmm.la" "libghmm.la" )
Making all in tools
/usr/bin/make  all-recursive
Making all in .
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT probdist.o -MD -MP -MF ".deps/probdist.Tpo" -c -o probdist.o probdist.c;  then mv -f ".deps/probdist.Tpo" ".deps/probdist.Po"; else rm -f ".deps/probdist.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc  -O2 -pipe -fno-strict-aliasing    -o probdist  probdist.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o probdist probdist.o  ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT cluster.o -MD -MP -MF ".deps/cluster.Tpo" -c -o cluster.o cluster.c;  then mv -f ".deps/cluster.Tpo" ".deps/cluster.Po"; else rm -f ".deps/cluster.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc  -O2 -pipe -fno-strict-aliasing    -o cluster  cluster.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o cluster cluster.o  ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT scluster.o -MD -MP -MF ".deps/scluster.Tpo" -c -o scluster.o scluster.c;  then mv -f ".deps/scluster.Tpo" ".deps/scluster.Po"; else rm -f ".deps/scluster.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc  -O2 -pipe -fno-strict-aliasing    -o scluster  scluster.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o scluster scluster.o  ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT smix_hmm.o -MD -MP -MF ".deps/smix_hmm.Tpo" -c -o smix_hmm.o smix_hmm.c;  then mv -f ".deps/smix_hmm.Tpo" ".deps/smix_hmm.Po"; else rm -f ".deps/smix_hmm.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc  -O2 -pipe -fno-strict-aliasing    -o smix_hmm  smix_hmm.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o smix_hmm smix_hmm.o  ../ghmm/.libs/libghmm.a -lm -lpthread
Making all in tests
Making all in data
Making all in .
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT root_finder_test.o -MD -MP -MF ".deps/root_finder_test.Tpo" -c -o root_finder_test.o root_finder_test.c;  then mv -f ".deps/root_finder_test.Tpo" ".deps/root_finder_test.Po"; else rm -f ".deps/root_finder_test.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o root_finder_test  root_finder_test.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o root_finder_test root_finder_test.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT coin_toss_test.o -MD -MP -MF ".deps/coin_toss_test.Tpo" -c -o coin_toss_test.o coin_toss_test.c;  then mv -f ".deps/coin_toss_test.Tpo" ".deps/coin_toss_test.Po"; else rm -f ".deps/coin_toss_test.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o coin_toss_test  coin_toss_test.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o coin_toss_test coin_toss_test.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT two_states_three_symbols.o -MD -MP -MF ".deps/two_states_three_symbols.Tpo" -c -o two_states_three_symbols.o two_states_three_symbols.c;  then mv -f ".deps/two_states_three_symbols.Tpo" ".deps/two_states_three_symbols.Po"; else rm -f ".deps/two_states_three_symbols.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o two_states_three_symbols  two_states_three_symbols.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o two_states_three_symbols two_states_three_symbols.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT chmm.o -MD -MP -MF ".deps/chmm.Tpo" -c -o chmm.o chmm.c;  then mv -f ".deps/chmm.Tpo" ".deps/chmm.Po"; else rm -f ".deps/chmm.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o chmm  chmm.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o chmm chmm.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT shmm_viterbi_test.o -MD -MP -MF ".deps/shmm_viterbi_test.Tpo" -c -o shmm_viterbi_test.o shmm_viterbi_test.c;  then mv -f ".deps/shmm_viterbi_test.Tpo" ".deps/shmm_viterbi_test.Po"; else rm -f ".deps/shmm_viterbi_test.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o shmm_viterbi_test  shmm_viterbi_test.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o shmm_viterbi_test shmm_viterbi_test.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT generate_PHI.o -MD -MP -MF ".deps/generate_PHI.Tpo" -c -o generate_PHI.o generate_PHI.c;  then mv -f ".deps/generate_PHI.Tpo" ".deps/generate_PHI.Po"; else rm -f ".deps/generate_PHI.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o generate_PHI  generate_PHI.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o generate_PHI generate_PHI.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT test_gsl_ran_gaussian_tail.o -MD -MP -MF ".deps/test_gsl_ran_gaussian_tail.Tpo" -c -o test_gsl_ran_gaussian_tail.o test_gsl_ran_gaussian_tail.c;  then mv -f ".deps/test_gsl_ran_gaussian_tail.Tpo" ".deps/test_gsl_ran_gaussian_tail.Po"; else rm -f ".deps/test_gsl_ran_gaussian_tail.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o test_gsl_ran_gaussian_tail  test_gsl_ran_gaussian_tail.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o test_gsl_ran_gaussian_tail test_gsl_ran_gaussian_tail.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sequences_test.o -MD -MP -MF ".deps/sequences_test.Tpo" -c -o sequences_test.o sequences_test.c;  then mv -f ".deps/sequences_test.Tpo" ".deps/sequences_test.Po"; else rm -f ".deps/sequences_test.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o sequences_test  sequences_test.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o sequences_test sequences_test.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT sequences_old_format.o -MD -MP -MF ".deps/sequences_old_format.Tpo" -c -o sequences_old_format.o sequences_old_format.c;  then mv -f ".deps/sequences_old_format.Tpo" ".deps/sequences_old_format.Po"; else rm -f ".deps/sequences_old_format.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o sequences_old_format  sequences_old_format.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o sequences_old_format sequences_old_format.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
if cc -DHAVE_CONFIG_H -I. -I. -I.. -I..     -O2 -pipe -fno-strict-aliasing -MT label_higher_order_test.o -MD -MP -MF ".deps/label_higher_order_test.Tpo" -c -o label_higher_order_test.o label_higher_order_test.c;  then mv -f ".deps/label_higher_order_test.Tpo" ".deps/label_higher_order_test.Po"; else rm -f ".deps/label_higher_order_test.Tpo"; exit 1; fi
/bin/sh /usr/local/bin/libtool --tag=CC --mode=link cc   -lstdc++  -O2 -pipe -fno-strict-aliasing    -o label_higher_order_test  label_higher_order_test.o ../ghmm/.libs/libghmm.a -lm -lpthread
libtool: link: cc -O2 -pipe -fno-strict-aliasing -o label_higher_order_test label_higher_order_test.o  -lstdc++ ../ghmm/.libs/libghmm.a -lm -lpthread
Making all in VisualC
Making all in .
Making all in coin_toss_test
Making all in .
Making all in ghmm
Making all in .
Making all in ghmmpp
Making all in .
Making all in coin_toss_test_pp
Making all in .
===>  Staging for ghmm-0.7.0b
===>   Generating temporary packing list
Making install in ghmm
Making install in .
test -z "/usr/local/lib" || /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/install-sh -d "/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib"
 /bin/sh /usr/local/bin/libtool --mode=install /usr/bin/install -c -o root -g wheel  'libghmm.la' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.la'
libtool: install: /usr/bin/install -c -o root -g wheel .libs/libghmm.so.0 /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.so.0
libtool: install: (cd /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib && { ln -s -f libghmm.so.0 libghmm.so || { rm -f libghmm.so && ln -s libghmm.so.0 libghmm.so; }; })
libtool: install: (cd /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib && { ln -s -f libghmm.so.0 libghmm.so || { rm -f libghmm.so && ln -s libghmm.so.0 libghmm.so; }; })
libtool: install: /usr/bin/install -c -o root -g wheel .libs/libghmm.lai /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.la
libtool: install: /usr/bin/install -c -o root -g wheel .libs/libghmm.a /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.a
libtool: install: chmod 644 /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.a
libtool: install: ranlib /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/lib/libghmm.a
libtool: install: warning: remember to run `libtool --finish /usr/local/lib'
test -z "/usr/local/share/ghmm" || /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/install-sh -d "/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/share/ghmm"
 install  -o root -g wheel -m 444 'PHI_001_20.dat' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/share/ghmm/PHI_001_20.dat'
test -z "/usr/local/include/ghmm" || /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/install-sh -d "/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm"
 install  -o root -g wheel -m 444 'ghmm.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/ghmm.h'
 install  -o root -g wheel -m 444 'foba.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/foba.h'
 install  -o root -g wheel -m 444 'model.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/model.h'
 install  -o root -g wheel -m 444 'cluster.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/cluster.h'
 install  -o root -g wheel -m 444 'scluster.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/scluster.h'
 install  -o root -g wheel -m 444 'root_finder.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/root_finder.h'
 install  -o root -g wheel -m 444 'reestimate.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/reestimate.h'
 install  -o root -g wheel -m 444 'sequence.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sequence.h'
 install  -o root -g wheel -m 444 'viterbi.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/viterbi.h'
 install  -o root -g wheel -m 444 'sfoba.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sfoba.h'
 install  -o root -g wheel -m 444 'sviterbi.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sviterbi.h'
 install  -o root -g wheel -m 444 'smodel.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/smodel.h'
 install  -o root -g wheel -m 444 'sdmodel.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sdmodel.h'
 install  -o root -g wheel -m 444 'sdfoba.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sdfoba.h'
 install  -o root -g wheel -m 444 'sreestimate.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sreestimate.h'
 install  -o root -g wheel -m 444 'sgenerate.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/sgenerate.h'
 install  -o root -g wheel -m 444 'smixturehmm.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/smixturehmm.h'
 install  -o root -g wheel -m 444 'scanner.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/scanner.h'
 install  -o root -g wheel -m 444 'gauss_tail.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/gauss_tail.h'
 install  -o root -g wheel -m 444 'smap_classify.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/smap_classify.h'
 install  -o root -g wheel -m 444 'kbest.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/kbest.h'
 install  -o root -g wheel -m 444 'gradescent.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/gradescent.h'
 install  -o root -g wheel -m 444 'discrime.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/discrime.h'
 install  -o root -g wheel -m 444 'psequence.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/psequence.h'
 install  -o root -g wheel -m 444 'pmodel.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/pmodel.h'
 install  -o root -g wheel -m 444 'linkedlist.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/linkedlist.h'
 install  -o root -g wheel -m 444 'pviterbi.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/pviterbi.h'
 install  -o root -g wheel -m 444 'pviterbi_propagate.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/pviterbi_propagate.h'
 install  -o root -g wheel -m 444 'vector.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/vector.h'
 install  -o root -g wheel -m 444 'matrix.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/matrix.h'
 install  -o root -g wheel -m 444 'const.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/const.h'
 install  -o root -g wheel -m 444 'rng.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/rng.h'
 install  -o root -g wheel -m 444 'mes.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/mes.h'
 install  -o root -g wheel -m 444 'randvar.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/randvar.h'
 install  -o root -g wheel -m 444 'internal.h' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/include/ghmm/internal.h'
Making install in tools
/usr/bin/make  install-recursive
Making install in .
test -z "/usr/local/bin" || /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/install-sh -d "/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin"
  /bin/sh /usr/local/bin/libtool --mode=install install  -s -o root -g wheel -m 555 'probdist' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/probdist'
libtool: install: install -o root -g wheel -m 555 -s probdist /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/probdist
  /bin/sh /usr/local/bin/libtool --mode=install install  -s -o root -g wheel -m 555 'cluster' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/cluster'
libtool: install: install -o root -g wheel -m 555 -s cluster /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/cluster
  /bin/sh /usr/local/bin/libtool --mode=install install  -s -o root -g wheel -m 555 'scluster' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/scluster'
libtool: install: install -o root -g wheel -m 555 -s scluster /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/scluster
  /bin/sh /usr/local/bin/libtool --mode=install install  -s -o root -g wheel -m 555 'smix_hmm' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/smix_hmm'
libtool: install: install -o root -g wheel -m 555 -s smix_hmm /obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/smix_hmm
test -z "/usr/local/bin" || /obj/buildshare/ports/355755/science/ghmm/work/ghmm-0.7.0/install-sh -d "/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin"
 install  -o root -g wheel -m 555 'ghmm-config' '/obj/buildshare/ports/355755/science/ghmm/work/stage/usr/local/bin/ghmm-config'
Making install in tests
Making install in data
Making install in .
Making install in VisualC
Making install in .
Making install in coin_toss_test
Making install in .
Making install in ghmm
Making install in .
Making install in ghmmpp
Making install in .
Making install in coin_toss_test_pp
Making install in .
====> Compressing man pages (compress-man)
===>  Installing for ghmm-0.7.0b
===>  Checking if science/ghmm already installed
===>   Registering installation for ghmm-0.7.0b
Installing ghmm-0.7.0b... done
Make package
===>  Building package for ghmm-0.7.0b
slot1: removed