Building fasta3-36.3.6d_1.txz (origin /buildshare/ports/355755/biology/fasta3) for powerpc-10-0 on XXX slot1: created x distfiles/ x distfiles/fasta3/ x distfiles/fasta3/2014-01-29/ x distfiles/fasta3/2014-01-29/fasta-36.3.6d.tar.gz x packages/ x packages/pkg-1.2.7_2.txz ELF ldconfig path: /lib /usr/lib /usr/lib/compat Make depends ===> fasta3-36.3.6d_1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /buildshare/ports/355755/ports-mgmt/pkg ===> Installing existing package /packages/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of fasta3-36.3.6d_1 Make install ===> License Fasta accepted by the user ===> fasta3-36.3.6d_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fasta3-36.3.6d_1 for building ===> Extracting for fasta3-36.3.6d_1 => SHA256 Checksum OK for fasta3/2014-01-29/fasta-36.3.6d.tar.gz. ===> Patching for fasta3-36.3.6d_1 ===> Applying FreeBSD patches for fasta3-36.3.6d_1 ===> Configuring for fasta3-36.3.6d_1 ===> Building for fasta3-36.3.6d_1 cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -DCOMP_MLIB -c comp_lib9.c -o comp_mthr9.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c work_thr2.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c pthr_subs2.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -DCOMP_MLIB -c compacc2.c -o compacc2_t.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mshowbest.c -o showbest.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c build_ares.c -o build_ares.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c re_getlib.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -c mshowalign2.c -o mshowalign2_t.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c htime.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c apam.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c doinit.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTA initfa.c -o init_fa.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DLOCAL_SCORE -c scaleswn.c -o scale_se.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c karlin.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnfa.c -o drop_nfa.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c wm_align.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTA -c cal_cons.c -o calcons_fa.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c nmgetlib.c -o lgetlib.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mmgetaa.c -o lgetaa_m.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c c_dispn.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c ncbl2_mlib.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lib_sel.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c url_subs.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mrandom.c cc -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DSSEARCH initfa.c -o init_sw.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropgsw2.c -o dropgsw2.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c wm_align.c -o lwm_align.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DSSEARCH -c cal_cons.c -o calcons_sw.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c pssm_asn_subs.c cc -o ../bin/ssearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_sw.o dropgsw2.o lwm_align.o calcons_sw.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_MLIB -c comp_lib9.c -o comp_mlib9.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_MLIB -c compacc2.c -o compacc2_s.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DLALIGN -c mshowalign2.c -o lshowalign.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DLALIGN initfa.c -o init_lal.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c last_thresh.c cc -DLALIGN -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropgsw2.c -o droplal2.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lsim4.c cc -DLALIGN -DLCAL_CONS -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c cal_cons.c -o calcons_la.o cc -o ../bin/lalign36 comp_mlib9.o compacc2_s.o showbest.o build_ares.o re_getlib.o lshowalign.o htime.o apam.o doinit.o init_lal.o droplal2.o lsim4.o calcons_la.o scale_se.o karlin.o last_thresh.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz compacc2_s.o: In function `build_lib_db': compacc2.c:(.text+0x5ccc): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS initfa.c -o init_fs.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c scaleswt.c -o scaleswts.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c last_tat.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS tatstats.c -o tatstats_fs.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTS -c dropfs2.c -o drop_fs2.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTS -c cal_consf.c -o calcons_fs.o cc -o ../bin/fasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fs.o drop_fs2.o calcons_fs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTX initfa.c -o init_fx.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c faatran.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropfx.c -o drop_fx.o cc -o ../bin/fastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fx.o drop_fx.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTX -DTFAST initfa.c -o init_tfx.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST dropfx.c -o drop_tfx.o cc -o ../bin/tfastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfx.o drop_tfx.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTY initfa.c -o init_fy.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropfz2.c -o drop_fz.o cc -o ../bin/fasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fy.o drop_fz.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTY -DTFAST initfa.c -o init_tfy.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST dropfz2.c -o drop_tfz.o cc -o ../bin/tfasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfy.o drop_tfz.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS -DTFAST initfa.c -o init_tfs.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST -DFASTS dropfs2.c -o drop_tfs.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTS -c cal_consf.c -o calcons_tfs.o cc -o ../bin/tfasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfs.o drop_tfs.o calcons_tfs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM initfa.c -o init_fm.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM tatstats.c -o tatstats_fm.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM dropfs2.c -o drop_fm.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTM -c cal_consf.c -o calcons_fm.o cc -o ../bin/fastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fm.o drop_fm.o calcons_fm.o scaleswts.o last_tat.o tatstats_fm.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mshowalign2.c -o mshowalign2_s.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM -DTFAST initfa.c -o init_tfm.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST -DFASTM dropfs2.c -o drop_tfm.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTM -c cal_consf.c -o calcons_tfm.o cc -o ../bin/tfastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_s.o htime.o apam.o doinit.o init_tfm.o drop_tfm.o calcons_tfm.o scaleswts.o tatstats_fm.o last_tat.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF initfa.c -o init_ff.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTF -c scaleswt.c -o scaleswtf.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF tatstats.c -o tatstats_ff.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF dropff2.c -o drop_ff2.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTF -c cal_consf.c -o calcons_ff.o cc -o ../bin/fastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_ff.o drop_ff2.o calcons_ff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF -DTFAST initfa.c -o init_tf.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF -DTFAST dropff2.c -o drop_tff.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTF -c cal_consf.c -o calcons_tff.o cc -o ../bin/tfastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tf.o drop_tff.o calcons_tff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -DNORMAL_DIST -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c scaleswn.c -o scale_sn.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DGLSEARCH initfa.c -o init_lnw.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnnw2.c -o droplnw.o cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DGGSEARCH -c wm_align.c -o gwm_align.o cc -o ../bin/glsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_lnw.o droplnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DGGSEARCH initfa.c -o init_gnw.o cc -DGLOBAL_GLOBAL -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnnw2.c -o dropgnw.o cc -o ../bin/ggsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_gnw.o dropgnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lav2plt.c cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lavplt_ps.c cc -DUNIX -o ../bin/lav2ps lav2plt.o lavplt_ps.o -lm cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lavplt_svg.c cc -DUNIX -o ../bin/lav2svg lav2plt.o lavplt_svg.o -lm cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -o ../bin/map_db map_db.c ===> Staging for fasta3-36.3.6d_1 ===> Generating temporary packing list cc -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/ssearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_sw.o dropgsw2.o lwm_align.o calcons_sw.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/lalign36 comp_mlib9.o compacc2_s.o showbest.o build_ares.o re_getlib.o lshowalign.o htime.o apam.o doinit.o init_lal.o droplal2.o lsim4.o calcons_la.o scale_se.o karlin.o last_thresh.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz compacc2_s.o: In function `build_lib_db': compacc2.c:(.text+0x5ccc): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fs.o drop_fs2.o calcons_fs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fx.o drop_fx.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfx.o drop_tfx.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fy.o drop_fz.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfy.o drop_tfz.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfs.o drop_tfs.o calcons_tfs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fm.o drop_fm.o calcons_fm.o scaleswts.o last_tat.o tatstats_fm.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_s.o htime.o apam.o doinit.o init_tfm.o drop_tfm.o calcons_tfm.o scaleswts.o tatstats_fm.o last_tat.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_ff.o drop_ff2.o calcons_ff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tf.o drop_tff.o calcons_tff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/glsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_lnw.o droplnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/ggsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_gnw.o dropgnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o: In function `build_lib_db': compacc2.c:(.text+0x5e80): warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -DUNIX -o ../bin/lav2ps lav2plt.o lavplt_ps.o -lm cc -DUNIX -o ../bin/lav2svg lav2plt.o lavplt_svg.o -lm cc -O2 -pipe -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='slot1.XXX' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -o ../bin/map_db map_db.c cd ../bin; cp fasta36 ssearch36 lalign36 fasts36 fastx36 tfastx36 fasty36 tfasty36 tfasts36 fastm36 tfastm36 fastf36 tfastf36 glsearch36 ggsearch36 lav2ps lav2svg map_db /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/bin; cd ../src (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/bin && install -s -o root -g wheel -m 555 * /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/bin) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/conf && install -o root -g wheel -m 444 fastlibs /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/etc/fastlibs.sample) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 data/*.mat /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fastf3.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasts3.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 prss3.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 map_db.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 ps_lav.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/fastf35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/fasts35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/fastm35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/fastx35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/fasty35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/ggsearch35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/lalign35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/ssearch35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/tfasta35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/tfastf35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/tfasts35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/tfastx35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/tfasty35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/prfx35.1) (/bin/ln -sf fasta36.1 /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/man/man1/prss35.1) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 COPYRIGHT /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 FASTA_LIST /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 README /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 README.versions /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasta_func.doc /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 readme.* /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasta.defaults /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasta.options /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 fasta_versions.html /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d/doc && install -o root -g wheel -m 444 changes*.html /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/doc/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 seq/*.aa /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/examples/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 seq/*.lc /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/examples/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 seq/*.seq /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/examples/fasta3) (cd /obj/buildshare/ports/355755/biology/fasta3/work/fasta-36.3.6d && install -o root -g wheel -m 444 seq/*.lib /obj/buildshare/ports/355755/biology/fasta3/work/stage/usr/local/share/examples/fasta3) ====> Compressing man pages (compress-man) ===> Installing for fasta3-36.3.6d_1 ===> Checking if biology/fasta3 already installed ===> Registering installation for fasta3-36.3.6d_1 Installing fasta3-36.3.6d_1... done ============================================================================= The FASTA3 package has been successfully installed. A sample configuration file has been installed to /usr/local/etc as "fastlibs.sample". This may be renamed to "fastlibs" and edited to suit the requirements of a particular site. In order to use the FASTA3 programs, a user must set the environment variable FASTLIBS to contain the full path of the FASTA3 configuration file, e.g.: set FASTLIBS to: "/usr/local/etc/fastlibs" ============================================================================== Make package ===> Building package for fasta3-36.3.6d_1 slot1: removed