Copyright |
Copyright (C) 2004, 2006, 2008 Naohisa Goto <ng@bioruby.org> |
License |
The Ruby License |
$Id:$
BLAT result parser (psl / pslx format).
In BLAT results, the start position of a sequnece is numbered as 0. On the other hand, in many other homology search programs, the start position of a sequence is numbered as 1. To keep compatibility, the BLAT parser adds 1 to every position number.
Kent, W.J., BLAT–the BLAST-like alignment tool, Genome Research, 12, 656–664, 2002. www.genome.org/cgi/content/abstract/12/4/656