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1 | {"name":"refdb","origin":"textproc/refdb","version":"0.9.9_7","comment":"Bibliographic·reference·database","maintainer":"ohartman@zedat.fu-berlin.de","www":"http://refdb.sourceforge.net/","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":7434387,"licenselogic":"single","desc":"RefDB·is·a·client-server·database·system·for·storing,·retrieving·and\nformatting·bibliographic·references.\n\nWWW:·http://refdb.sourceforge.net/","deps":{"expat":{"origin":"textproc/expat2","version":"2.1.0_3"},"btparse":{"origin":"textproc/btparse","version":"0.35_1"},"postgresql93-client":{"origin":"databases/postgresql93-client","version":"9.3.13"},"readline":{"origin":"devel/readline","version":"6.3.8"},"libdbi":{"origin":"databases/libdbi","version":"0.9.0_3"},"perl5":{"origin":"lang/perl5.20","version":"5.20.3_13"}},"categories":["textproc"],"shlibs_required":["libbtparse.so.0","libexpat.so.1","libreadline.so.6","libdbi.so.1"],"options":{"DOCS":"on","MYSQL":"off","PGSQL":"on","SQLITE":"off"},"fil·✂ | 1 | {"name":"refdb","origin":"textproc/refdb","version":"0.9.9_7","comment":"Bibliographic·reference·database","maintainer":"ohartman@zedat.fu-berlin.de","www":"http://refdb.sourceforge.net/","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":7434387,"licenselogic":"single","desc":"RefDB·is·a·client-server·database·system·for·storing,·retrieving·and\nformatting·bibliographic·references.\n\nWWW:·http://refdb.sourceforge.net/","deps":{"expat":{"origin":"textproc/expat2","version":"2.1.0_3"},"btparse":{"origin":"textproc/btparse","version":"0.35_1"},"postgresql93-client":{"origin":"databases/postgresql93-client","version":"9.3.13"},"readline":{"origin":"devel/readline","version":"6.3.8"},"libdbi":{"origin":"databases/libdbi","version":"0.9.0_3"},"perl5":{"origin":"lang/perl5.20","version":"5.20.3_13"}},"categories":["textproc"],"shlibs_required":["libbtparse.so.0","libexpat.so.1","libreadline.so.6","libdbi.so.1"],"options":{"DOCS":"on","MYSQL":"off","PGSQL":"on","SQLITE":"off"},"fil·✂ |
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1 | BEGIN·TRANSACTION; | 1 | BEGIN·TRANSACTION; |
2 | CREATE·TABLE·t_meta·(meta_app·VARCHAR(20),meta_type·VARCHAR(20),meta_version·VARCHAR(20),meta_dbversion·SMALLINT,meta_create_date·DATETIME,meta_modify_date·DATETIME); | 2 | CREATE·TABLE·t_meta·(meta_app·VARCHAR(20),meta_type·VARCHAR(20),meta_version·VARCHAR(20),meta_dbversion·SMALLINT,meta_create_date·DATETIME,meta_modify_date·DATETIME); |
3 | INSERT·INTO·"t_meta"·VALUES('refdb',·'risx',·'0.9.9-1',·2,·'2016-06-1 | 3 | INSERT·INTO·"t_meta"·VALUES('refdb',·'risx',·'0.9.9-1',·2,·'2016-06-11·19:38:04',·'2016-06-11·19:38:04'); |
4 | CREATE·TABLE·t_refdb·(refdb_id·INTEGER·PRIMARY·KEY,refdb_citekey·TEXT·UNIQUE,refdb_type·TEXT,refdb_pubyear·SMALLINT,refdb_secyear·SMALLINT,refdb_startpage·TEXT,refdb_endpage·TEXT,refdb_abstract·TEXT,refdb_title·TEXT,refdb_volume·TEXT,refdb_issue·TEXT,refdb_booktitle·TEXT,refdb_city·TEXT,refdb_publisher·TEXT,refdb_title_series·TEXT,refdb_address·TEXT,refdb_issn·TEXT,refdb_pyother_info·TEXT,refdb_secother_info·TEXT,refdb_periodical_id·BIGINT,refdb_user1·TEXT,refdb_user2·TEXT,refdb_user3·TEXT,refdb_user4·TEXT,refdb_user5·TEXT,refdb_misc1·TEXT,refdb_misc2·TEXT,refdb_misc3·TEXT); | 4 | CREATE·TABLE·t_refdb·(refdb_id·INTEGER·PRIMARY·KEY,refdb_citekey·TEXT·UNIQUE,refdb_type·TEXT,refdb_pubyear·SMALLINT,refdb_secyear·SMALLINT,refdb_startpage·TEXT,refdb_endpage·TEXT,refdb_abstract·TEXT,refdb_title·TEXT,refdb_volume·TEXT,refdb_issue·TEXT,refdb_booktitle·TEXT,refdb_city·TEXT,refdb_publisher·TEXT,refdb_title_series·TEXT,refdb_address·TEXT,refdb_issn·TEXT,refdb_pyother_info·TEXT,refdb_secother_info·TEXT,refdb_periodical_id·BIGINT,refdb_user1·TEXT,refdb_user2·TEXT,refdb_user3·TEXT,refdb_user4·TEXT,refdb_user5·TEXT,refdb_misc1·TEXT,refdb_misc2·TEXT,refdb_misc3·TEXT); |
5 | CREATE·TABLE·t_author·(author_id·INTEGER·PRIMARY·KEY,author_name·TEXT·NOT·NULL,author_lastname·TEXT,author_firstname·TEXT,author_middlename·TEXT,author_suffix·TEXT); | 5 | CREATE·TABLE·t_author·(author_id·INTEGER·PRIMARY·KEY,author_name·TEXT·NOT·NULL,author_lastname·TEXT,author_firstname·TEXT,author_middlename·TEXT,author_suffix·TEXT); |
6 | CREATE·TABLE·t_keyword·(keyword_id·INTEGER·PRIMARY·KEY,keyword_name·TEXT·NOT·NULL); | 6 | CREATE·TABLE·t_keyword·(keyword_id·INTEGER·PRIMARY·KEY,keyword_name·TEXT·NOT·NULL); |
7 | CREATE·TABLE·t_periodical·(periodical_id·INTEGER·PRIMARY·KEY,periodical_name·TEXT,periodical_abbrev·TEXT,periodical_custabbrev1·TEXT,periodical_custabbrev2·TEXT); | 7 | CREATE·TABLE·t_periodical·(periodical_id·INTEGER·PRIMARY·KEY,periodical_name·TEXT,periodical_abbrev·TEXT,periodical_custabbrev1·TEXT,periodical_custabbrev2·TEXT); |
8 | CREATE·TABLE·t_note·(note_id·INTEGER·PRIMARY·KEY,note_key·TEXT·UNIQUE,note_title·TEXT,note_content_type·TEXT,note_content_xmllang·TEXT,note_user_id·BIGINT,note_date·DATE,note_share·SMALLINT,note_content·TEXT); | 8 | CREATE·TABLE·t_note·(note_id·INTEGER·PRIMARY·KEY,note_key·TEXT·UNIQUE,note_title·TEXT,note_content_type·TEXT,note_content_xmllang·TEXT,note_user_id·BIGINT,note_date·DATE,note_share·SMALLINT,note_content·TEXT); |
9 | CREATE·TABLE·t_user·(user_id·INTEGER·PRIMARY·KEY,user_name·TEXT·NOT·NULL); | 9 | CREATE·TABLE·t_user·(user_id·INTEGER·PRIMARY·KEY,user_name·TEXT·NOT·NULL); |
10 | CREATE·TABLE·t_link·(link_id·INTEGER·PRIMARY·KEY,link_url·TEXT·NOT·NULL); | 10 | CREATE·TABLE·t_link·(link_id·INTEGER·PRIMARY·KEY,link_url·TEXT·NOT·NULL); |
Offset 341, 15 lines modified | Offset 341, 15 lines modified | ||
341 | ··meta_type·TEXT, | 341 | ··meta_type·TEXT, |
342 | ··meta_version·TEXT, | 342 | ··meta_version·TEXT, |
343 | ··meta_dbversion·SMALLINT, | 343 | ··meta_dbversion·SMALLINT, |
344 | ··meta_create_date·DATETIME, | 344 | ··meta_create_date·DATETIME, |
345 | ··meta_modify_date·DATETIME | 345 | ··meta_modify_date·DATETIME |
346 | ); | 346 | ); |
347 | INSERT·INTO·t_meta·VALUES·('refdb','refdb','0.9.9-1',2,'2016-06-1 | 347 | INSERT·INTO·t_meta·VALUES·('refdb','refdb','0.9.9-1',2,'2016-06-11·19:38:04','2016-06-11·19:38:04'); |
348 | CREATE·TABLE·t_journal_words·( | 348 | CREATE·TABLE·t_journal_words·( |
349 | ··name·TEXT·DEFAULT·''·NOT·NULL, | 349 | ··name·TEXT·DEFAULT·''·NOT·NULL, |
350 | ··PRIMARY·KEY·(name) | 350 | ··PRIMARY·KEY·(name) |
351 | ); | 351 | ); |
Offset 424, 15 lines modified | Offset 424, 15 lines modified | ||
424 | ··meta_type·TEXT, | 424 | ··meta_type·TEXT, |
425 | ··meta_version·TEXT, | 425 | ··meta_version·TEXT, |
426 | ··meta_dbversion·SMALLINT, | 426 | ··meta_dbversion·SMALLINT, |
427 | ··meta_create_date·DATETIME, | 427 | ··meta_create_date·DATETIME, |
428 | ··meta_modify_date·DATETIME | 428 | ··meta_modify_date·DATETIME |
429 | ); | 429 | ); |
430 | INSERT·INTO·t_meta·VALUES·('refdb','refdb','0.9.9-1',3,'2016-06-1 | 430 | INSERT·INTO·t_meta·VALUES·('refdb','refdb','0.9.9-1',3,'2016-06-11·19:38:04','2016-06-11·19:38:04'); |
431 | CREATE·TABLE·t_journal_words·( | 431 | CREATE·TABLE·t_journal_words·( |
432 | ··name·TEXT·DEFAULT·''·NOT·NULL, | 432 | ··name·TEXT·DEFAULT·''·NOT·NULL, |
433 | ··PRIMARY·KEY·(name) | 433 | ··PRIMARY·KEY·(name) |
434 | ); | 434 | ); |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 3. Current·limitations·and·platform·issues</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt01.html"·title="Part I. Overview"·/><link·rel="prev"·href="ch02s05.html"·title="Related·Software"·/><link·rel="next"·href="ch03s02.html"·title="Platform·issues"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 3. Current·limitations·and·platform·issues</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch02s05.html">Prev</a> </td><th·width="60%"·align="center">Part I. Overview</th><td·width="20%"·align="right"> <a·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 3. Current·limitations·and·platform·issues</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt01.html"·title="Part I. Overview"·/><link·rel="prev"·href="ch02s05.html"·title="Related·Software"·/><link·rel="next"·href="ch03s02.html"·title="Platform·issues"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 3. Current·limitations·and·platform·issues</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch02s05.html">Prev</a> </td><th·width="60%"·align="center">Part I. Overview</th><td·width="20%"·align="right"> <a·✂ |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Platform·issues</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch03.html"·title="Chapter 3. Current·limitations·and·platform·issues"·/><link·rel="prev"·href="ch03.html"·title="Chapter 3. Current·limitations·and·platform·issues"·/><link·rel="next"·href="pt02.html"·title="Part II. Administrator·manual"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Platform·issues</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch03.html">Prev</a> </td><th·width="60%"·align="center">Chapter 3. Current·limitations·and·platform·issues<·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Platform·issues</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch03.html"·title="Chapter 3. Current·limitations·and·platform·issues"·/><link·rel="prev"·href="ch03.html"·title="Chapter 3. Current·limitations·and·platform·issues"·/><link·rel="next"·href="pt02.html"·title="Part II. Administrator·manual"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Platform·issues</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch03.html">Prev</a> </td><th·width="60%"·align="center">Chapter 3. Current·limitations·and·platform·issues<·✂ |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 4. Installation</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt02.html"·title="Part II. Administrator·manual"·/><link·rel="prev"·href="pt02.html"·title="Part II. Administrator·manual"·/><link·rel="next"·href="ch04s02.html"·title="Upgrading·from·an·older·version"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 4. Installation</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="pt02.html">Prev</a> </td><th·width="60%"·align="center">Part II. Administrator·manual</th><td·width="20%"·align="right"> <a·acce·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 4. Installation</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt02.html"·title="Part II. Administrator·manual"·/><link·rel="prev"·href="pt02.html"·title="Part II. Administrator·manual"·/><link·rel="next"·href="ch04s02.html"·title="Upgrading·from·an·older·version"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 4. Installation</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="pt02.html">Prev</a> </td><th·width="60%"·align="center">Part II. Administrator·manual</th><td·width="20%"·align="right"> <a·acce·✂ |
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1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> | 1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> |
2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Things·to·know·before·you·start</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s02.html"·title="Upgrading·from·an·older·version"·/><link·rel="next"·href="ch04s04.html"·title="Installation·on·Linux·and·other·Unix·variants"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Things·to·know·before·you·start</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation</th><td·width="2·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Things·to·know·before·you·start</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s02.html"·title="Upgrading·from·an·older·version"·/><link·rel="next"·href="ch04s04.html"·title="Installation·on·Linux·and·other·Unix·variants"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Things·to·know·before·you·start</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation</th><td·width="2·✂ |
3 | serverip» 127.0.0.1 | 3 | serverip» 127.0.0.1 |
4 | port» 9734 | 4 | port» 9734 |
5 | pager» more | 5 | pager» more |
6 | timeout»180 | 6 | timeout»180 |
7 | #·end·of·refdbcrc | 7 | #·end·of·refdbcrc |
8 | » </pre><p>This·is·the·corresponding·copy·that·one·of·the·users·of·the·system·created·as·<code·class="filename">/home/joe/.refdbcrc</code>:</p><pre·class="programlisting">#·This·is·the·user·configuration·file·for·refdbc | 8 | » </pre><p>This·is·the·corresponding·copy·that·one·of·the·users·of·the·system·created·as·<code·class="filename">/home/joe/.refdbcrc</code>:</p><pre·class="programlisting">#·This·is·the·user·configuration·file·for·refdbc |
9 | pager» less | 9 | pager» less |
10 | username» joesixpack | 10 | username» joesixpack |
11 | passwd··*· | 11 | passwd··*· |
12 | timeout»30 | 12 | timeout»30 |
13 | #·end·of·.refdbcrc | 13 | #·end·of·.refdbcrc |
14 | » </pre><p>As·you·can·see·our·hypothetical·system·administrator·configured·the·IP·address·(<code·class="varname">serverip</code>)·and·the·<code·class="varname">port</code>·where·refdbd·listens·to·the·client·requests.·This·value·is·most·likely·the·same·for·all·users·on·the·system,·so·this·is·nothing·to·worry·about·for·the·users.·<code·class="filename">more</code>·is·defined·as·the·default·<code·class="varname">pager</code>,·and·the·<code·class="varname">timeout</code>·is·set·to·3 minutes.</p><p>Joe·Sixpack,·our·reckless·user,·does·not·like·<code·class="filename">more</code>·as·a·pager·and·prefers·to·use·<code·class="filename">less</code>·instead.·He·also·thinks·that·half·a·minute·as·a·timeout·should·be·enough.·Both·of·these·settings·override·the·corresponding·values·in·the·global·file.·<code·class="varname">serverip</code>·and·<code·class="varname">port</code>·are·not·redefined·in·the·user's·copy,·so·the·values·of·the·global·file·take·effect.·Joe·also·defined·<code·class="varname">username</code>·(which·happens·✂ | 14 | » </pre><p>As·you·can·see·our·hypothetical·system·administrator·configured·the·IP·address·(<code·class="varname">serverip</code>)·and·the·<code·class="varname">port</code>·where·refdbd·listens·to·the·client·requests.·This·value·is·most·likely·the·same·for·all·users·on·the·system,·so·this·is·nothing·to·worry·about·for·the·users.·<code·class="filename">more</code>·is·defined·as·the·default·<code·class="varname">pager</code>,·and·the·<code·class="varname">timeout</code>·is·set·to·3 minutes.</p><p>Joe·Sixpack,·our·reckless·user,·does·not·like·<code·class="filename">more</code>·as·a·pager·and·prefers·to·use·<code·class="filename">less</code>·instead.·He·also·thinks·that·half·a·minute·as·a·timeout·should·be·enough.·Both·of·these·settings·override·the·corresponding·values·in·the·global·file.·<code·class="varname">serverip</code>·and·<code·class="varname">port</code>·are·not·redefined·in·the·user's·copy,·so·the·values·of·the·global·file·take·effect.·Joe·also·defined·<code·class="varname">username</code>·(which·happens·✂ |
15 | » ····<code·class="filename">/usr/local/bin</code> | 15 | » ····<code·class="filename">/usr/local/bin</code> |
16 | » ··</span></dt><dd><p>This·directory·will·receive·all·binary·files·and·shell·scripts.</p></dd><dt><span·class="term"> | 16 | » ··</span></dt><dd><p>This·directory·will·receive·all·binary·files·and·shell·scripts.</p></dd><dt><span·class="term"> |
17 | » ····<code·class="filename">/usr/local/etc/refdb</code> | 17 | » ····<code·class="filename">/usr/local/etc/refdb</code> |
18 | » ··</span></dt><dd><p>All·global·RefDB·configuration·files·end·up·in·this·directory.</p></dd><dt><span·class="term"> | 18 | » ··</span></dt><dd><p>All·global·RefDB·configuration·files·end·up·in·this·directory.</p></dd><dt><span·class="term"> |
19 | » ····<code·class="filename">/usr/local/share/refdb</code> | 19 | » ····<code·class="filename">/usr/local/share/refdb</code> |
20 | » ··</span></dt><dd><p>This·directory·contains·shareable,·operating·system·independent·files.·The·files·are·organized·in·a·couple·of·subdirectories:</p><div·class="itemizedlist"><ul·class="itemizedlist"·type="disc"><li·class="listitem"><p><code·class="filename">css</code>·contains·a·cascading·stylesheet·suitable·for·the·HTML·output·of·the·<a·class="link"·href="re11.html#app-c-command-getref"·title="getref"><span·class="command"><strong>getref</strong></span></a>·command.</p></li><li·class="listitem"><p><code·class="filename">declarations</code>·contains·the·default·SGML·declarations.</p></li><li·class="listitem"><p><code·class="filename">dsssl</code>·contains·DSSSL·stylesheets.</p></li><li·class="listitem"><p><code·class="filename">dtd</code>·contains·the·document·type·definitions·used·by·RefDB.</p></li><li·class="listitem"><p><code·class="filename">examples</code>·contains·a·few·example·reference·data·files·as·well·as·SGML·and·XML·test·documents·using·RefDB·citations.</p></li><li·class="listitem"><p><code·cla·✂ | 20 | » ··</span></dt><dd><p>This·directory·contains·shareable,·operating·system·independent·files.·The·files·are·organized·in·a·couple·of·subdirectories:</p><div·class="itemizedlist"><ul·class="itemizedlist"·type="disc"><li·class="listitem"><p><code·class="filename">css</code>·contains·a·cascading·stylesheet·suitable·for·the·HTML·output·of·the·<a·class="link"·href="re11.html#app-c-command-getref"·title="getref"><span·class="command"><strong>getref</strong></span></a>·command.</p></li><li·class="listitem"><p><code·class="filename">declarations</code>·contains·the·default·SGML·declarations.</p></li><li·class="listitem"><p><code·class="filename">dsssl</code>·contains·DSSSL·stylesheets.</p></li><li·class="listitem"><p><code·class="filename">dtd</code>·contains·the·document·type·definitions·used·by·RefDB.</p></li><li·class="listitem"><p><code·class="filename">examples</code>·contains·a·few·example·reference·data·files·as·well·as·SGML·and·XML·test·documents·using·RefDB·citations.</p></li><li·class="listitem"><p><code·cla·✂ |
21 | » ····<code·class="filename">/usr/local/var/lib/refdb/db</code> | 21 | » ····<code·class="filename">/usr/local/var/lib/refdb/db</code> |
Offset 1, 42 lines modified | Offset 1, 42 lines modified | ||
1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> | 1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> |
2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Installation·on·Linux·and·other·Unix·variants</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s03.html"·title="Things·to·know·before·you·start"·/><link·rel="next"·href="ch04s05.html"·title="Installation·on·Windows NT/2000/XP"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Installation·on·Linux·and·other·Unix·variants</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s03.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Installation·on·Linux·and·other·Unix·variants</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s03.html"·title="Things·to·know·before·you·start"·/><link·rel="next"·href="ch04s05.html"·title="Installation·on·Windows NT/2000/XP"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Installation·on·Linux·and·other·Unix·variants</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s03.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation·✂ |
3 | » ······<span·class="command"><strong>make</strong></span> | 3 | » ······<span·class="command"><strong>make</strong></span> |
4 | » ····</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>The·autotools-generated·Makefiles·apparently·prefer·(or·require?)·GNU·make.·If·<span·class="command"><strong>make</strong></span>·results·in·spurious·error·messages·<span·class="emphasis"><em>about·the·Makefile·syntax</em></span>,·try·to·run·<span·class="command"><strong>gmake</strong></span>·instead·as·your·regular·<code·class="filename">make</code>·is·apparently·not·the·GNU·version.</p></div></li><li·class="step"·title="Step·6"><p> | 4 | » ····</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>The·autotools-generated·Makefiles·apparently·prefer·(or·require?)·GNU·make.·If·<span·class="command"><strong>make</strong></span>·results·in·spurious·error·messages·<span·class="emphasis"><em>about·the·Makefile·syntax</em></span>,·try·to·run·<span·class="command"><strong>gmake</strong></span>·instead·as·your·regular·<code·class="filename">make</code>·is·apparently·not·the·GNU·version.</p></div></li><li·class="step"·title="Step·6"><p> |
5 | » ······<span·class="command"><strong>make·install</strong></span> | 5 | » ······<span·class="command"><strong>make·install</strong></span> |
6 | » ····</p><p>This·will·install·the·binaries·and·scripts·in·<code·class="filename">/usr/local/bin</code>·and·the·data·in·<code·class="filename">/usr/local/share/refdb</code>·unless·you·chose·different·directories·in·the·configure·step.·Again,·run·<span·class="command"><strong>gmake·install</strong></span>·instead·if·your·regular·<code·class="filename">make</code>·is·not·the·GNU·version.</p></li><li·class="step"·title="Step·7"><p>To·finish·the·installation,·please·follow·the·instructions·in·the·section·<a·class="link"·href="ch04s08.html"·title="Finishing·the·RefDB·installation">Finishing·the·RefDB·installation</a>·below.</p></li></ol></div><p>If·this·procedure·results·in·strange·error·messages,·you·probably·use·a·platform·that·is·not·supported·yet.·The·author·appreciates·a·porting·effort·or·a·description·of·the·problem·(in·this·particular·order).</p></div><div·class="sect3"·title="Living·on·the·bleeding·edge:·installing·a·SVN·version"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp597 | 6 | » ····</p><p>This·will·install·the·binaries·and·scripts·in·<code·class="filename">/usr/local/bin</code>·and·the·data·in·<code·class="filename">/usr/local/share/refdb</code>·unless·you·chose·different·directories·in·the·configure·step.·Again,·run·<span·class="command"><strong>gmake·install</strong></span>·instead·if·your·regular·<code·class="filename">make</code>·is·not·the·GNU·version.</p></li><li·class="step"·title="Step·7"><p>To·finish·the·installation,·please·follow·the·instructions·in·the·section·<a·class="link"·href="ch04s08.html"·title="Finishing·the·RefDB·installation">Finishing·the·RefDB·installation</a>·below.</p></li></ol></div><p>If·this·procedure·results·in·strange·error·messages,·you·probably·use·a·platform·that·is·not·supported·yet.·The·author·appreciates·a·porting·effort·or·a·description·of·the·problem·(in·this·particular·order).</p></div><div·class="sect3"·title="Living·on·the·bleeding·edge:·installing·a·SVN·version"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59715128"></a>Liv·✂ |
7 | » ······<code·class="prompt">$~/build·</code> | 7 | » ······<code·class="prompt">$~/build·</code> |
8 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/trunk·refdb</code></strong> | 8 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/trunk·refdb</code></strong> |
9 | » ····</pre><p>Other·interesting·modules·to·check·out·are·<code·class="filename">perlmod</code>·(the·Perl·modules·and·the·Perl·client·library)·and·<code·class="filename">elisp</code>·(the·Emacs·support·files).</p><p>If·you·are·interested·in·a·particular·repository·version,·release,·or·branch,·use·commands·along·these·lines:</p><pre·class="screen"> | 9 | » ····</pre><p>Other·interesting·modules·to·check·out·are·<code·class="filename">perlmod</code>·(the·Perl·modules·and·the·Perl·client·library)·and·<code·class="filename">elisp</code>·(the·Emacs·support·files).</p><p>If·you·are·interested·in·a·particular·repository·version,·release,·or·branch,·use·commands·along·these·lines:</p><pre·class="screen"> |
10 | » ······<code·class="prompt">$~/build·</code> | 10 | » ······<code·class="prompt">$~/build·</code> |
11 | » ······<strong·class="userinput"><code>svn·co·--revision·324·https://svn.sourceforge.net/svnroot/refdb/refdb/trunk·refdb-324</code></strong> | 11 | » ······<strong·class="userinput"><code>svn·co·--revision·324·https://svn.sourceforge.net/svnroot/refdb/refdb/trunk·refdb-324</code></strong> |
12 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/tags/Release-0.9.7·refdb-0.9.7</code></strong> | 12 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/tags/Release-0.9.7·refdb-0.9.7</code></strong> |
13 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/branches/back-to-a-1-branch·refdb-a1-branch</code></strong> | 13 | » ······<strong·class="userinput"><code>svn·co·https://svn.sourceforge.net/svnroot/refdb/refdb/branches/back-to-a-1-branch·refdb-a1-branch</code></strong> |
14 | » ····</pre></li><li·class="step"·title="Step·3"><p>If·you·want·to·keep·track·of·the·latest·developments,·you'll·have·to·update·your·SVN·working·copy·once·in·a·while.·Run·this·command·from·within·the·top-level·source·directory:</p><pre·class="screen"> | 14 | » ····</pre></li><li·class="step"·title="Step·3"><p>If·you·want·to·keep·track·of·the·latest·developments,·you'll·have·to·update·your·SVN·working·copy·once·in·a·while.·Run·this·command·from·within·the·top-level·source·directory:</p><pre·class="screen"> |
15 | » ······<code·class="prompt">$~/build/refdb·</code> | 15 | » ······<code·class="prompt">$~/build/refdb·</code> |
16 | » ······<strong·class="userinput"><code>svn·update</code></strong> | 16 | » ······<strong·class="userinput"><code>svn·update</code></strong> |
17 | » ····</pre><p>Consider·subscribing·to·the·refdb-cvs·mailing·list·as·you'll·be·notified·about·each·SVN·checkin.</p></li><li·class="step"·title="Step·4"><p>The·SVN·version·lacks·all·autotool-generated·files.·You'll·have·to·create·them·with·your·local·autotools.·RefDB·contains·a·small·script·called·<code·class="filename">autogen.sh</code>·in·its·top-level·directory·which·performs·all·necessary·steps.</p><pre·class="screen"> | 17 | » ····</pre><p>Consider·subscribing·to·the·refdb-cvs·mailing·list·as·you'll·be·notified·about·each·SVN·checkin.</p></li><li·class="step"·title="Step·4"><p>The·SVN·version·lacks·all·autotool-generated·files.·You'll·have·to·create·them·with·your·local·autotools.·RefDB·contains·a·small·script·called·<code·class="filename">autogen.sh</code>·in·its·top-level·directory·which·performs·all·necessary·steps.</p><pre·class="screen"> |
18 | » ······<code·class="prompt">$~/build/refdb·</code> | 18 | » ······<code·class="prompt">$~/build/refdb·</code> |
19 | » ······<strong·class="userinput"><code>./autogen.sh</code></strong> | 19 | » ······<strong·class="userinput"><code>./autogen.sh</code></strong> |
20 | » ····</pre><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>The·autotools·can·cause·severe·headaches·at·times.·If·the·above·command·causes·errors,·read·<code·class="filename">autogen.sh</code>·and·run·the·commands·manually,·substituting·different·versions·as·appropriate.·E.g.·substitute·<span·class="command"><strong>automake</strong></span>·with·<span·class="command"><strong>automake-1.8</strong></span>·if·this·gives·better·results.·The·native·autotools·shipped·with·FreeBSD·5.4·and·later·are·unusable·for·our·purposes,·you·have·to·install·the·gnu-autotools·package·instead.·You·have·to·modify·your·<code·class="envar">PATH</code>·to·pick·up·the·latter,·and·fiddle·with·the·m4·macro·paths·in·order·to·see·the·light.</p></div></li><li·class="step"·title="Step·5"><p>The·SVN·version·also·lacks·a·few·other·things·which·are·included·in·the·source·tarballs.·In·order·to·create·the·missing·stuff,·you'll·need·the·following·additional·tools:</p><div·class="itemized·✂ | 20 | » ····</pre><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>The·autotools·can·cause·severe·headaches·at·times.·If·the·above·command·causes·errors,·read·<code·class="filename">autogen.sh</code>·and·run·the·commands·manually,·substituting·different·versions·as·appropriate.·E.g.·substitute·<span·class="command"><strong>automake</strong></span>·with·<span·class="command"><strong>automake-1.8</strong></span>·if·this·gives·better·results.·The·native·autotools·shipped·with·FreeBSD·5.4·and·later·are·unusable·for·our·purposes,·you·have·to·install·the·gnu-autotools·package·instead.·You·have·to·modify·your·<code·class="envar">PATH</code>·to·pick·up·the·latter,·and·fiddle·with·the·m4·macro·paths·in·order·to·see·the·light.</p></div></li><li·class="step"·title="Step·5"><p>The·SVN·version·also·lacks·a·few·other·things·which·are·included·in·the·source·tarballs.·In·order·to·create·the·missing·stuff,·you'll·need·the·following·additional·tools:</p><div·class="itemized·✂ |
21 | » » <span·class="command"><strong>ln·-s·/etc/init.d/refdb·/etc/rc0.d/K20refdb</strong></span> | 21 | » » <span·class="command"><strong>ln·-s·/etc/init.d/refdb·/etc/rc0.d/K20refdb</strong></span> |
22 | » ······</p><p> | 22 | » ······</p><p> |
23 | » » <span·class="command"><strong>ln·-s·/etc/init.d/refdb·/etc/rc6.d/K20refdb</strong></span> | 23 | » » <span·class="command"><strong>ln·-s·/etc/init.d/refdb·/etc/rc6.d/K20refdb</strong></span> |
24 | » ······</p></li><li·class="step"·title="Step·5"><p>Review·the·settings·in·the·script·<code·class="filename">refdbctl</code>·which·by·default·is·installed·in·<code·class="filename">/usr/local/bin/</code>.·Most·likely·the·script·was·properly·customized·for·your·system·in·the·build·step·so·you·don't·have·to·change·anything.</p></li></ol></div><p>When·you·boot,·halt,·or·reboot·the·system·you·should·see·messages·on·the·screen·telling·you·that·the·daemon·has·been·started·or·stopped·successfully.·If·you·don't,·please·check·again·all·paths·in·the·scripts,·the·file·permissions,·and·the·runlevels·you're·looking·at.·Try·to·run·the·control·script·from·the·command·line,·e.g.·<span·class="command"><strong>refdbctl·start</strong></span>,·to·distinguish·between·general·setup·problems·and·init-related·setup·problems.</p></div><div·class="sect4"·title="BSD-style"><div·class="titlepage"><div><div><h5·class="title"><a·id="idp597 | 24 | » ······</p></li><li·class="step"·title="Step·5"><p>Review·the·settings·in·the·script·<code·class="filename">refdbctl</code>·which·by·default·is·installed·in·<code·class="filename">/usr/local/bin/</code>.·Most·likely·the·script·was·properly·customized·for·your·system·in·the·build·step·so·you·don't·have·to·change·anything.</p></li></ol></div><p>When·you·boot,·halt,·or·reboot·the·system·you·should·see·messages·on·the·screen·telling·you·that·the·daemon·has·been·started·or·stopped·successfully.·If·you·don't,·please·check·again·all·paths·in·the·scripts,·the·file·permissions,·and·the·runlevels·you're·looking·at.·Try·to·run·the·control·script·from·the·command·line,·e.g.·<span·class="command"><strong>refdbctl·start</strong></span>,·to·distinguish·between·general·setup·problems·and·init-related·setup·problems.</p></div><div·class="sect4"·title="BSD-style"><div·class="titlepage"><div><div><h5·class="title"><a·id="idp59763896"></a>BSD-style</h5></div></div></div><p>The·following·procedure·describes·the·installation·on·a··✂ |
25 | » ····<code·class="prompt">#~·</code> | 25 | » ····<code·class="prompt">#~·</code> |
26 | » ····<strong·class="userinput"><code>./configure·--sysconfdir=/etc·\ | 26 | » ····<strong·class="userinput"><code>./configure·--sysconfdir=/etc·\ |
27 | » ····--with-docbook-xsl=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh·\ | 27 | » ····--with-docbook-xsl=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh·\ |
28 | » ····--with-tei-xsl=/usr/local/lib/sgml/stylesheet/xsl</code></strong> | 28 | » ····--with-tei-xsl=/usr/local/lib/sgml/stylesheet/xsl</code></strong> |
29 | » ··</pre></div></div><div·class="sect3"·title="FreeBSD"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59 | 29 | » ··</pre></div></div><div·class="sect3"·title="FreeBSD"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59782328"></a>FreeBSD</h4></div></div></div><p>The·BSD·version·of·<span·class="command"><strong>make</strong></span>·cannot·handle·the·autotools-generated·Makefiles·correctly.·Use·gmake·instead,·and·set·CFLAGS=-I/usr/local/include·during·the·configuration·step.·The·full·configure·command,·using·the·default·installation·paths·for·the·accessory·files·and·programs,·looks·like·this:</p><pre·class="screen"> |
30 | » ··<code·class="prompt">#~·</code> | 30 | » ··<code·class="prompt">#~·</code> |
31 | » ··<strong·class="userinput"><code>CFLAGS=-I/usr/local/include·./configure·--with-expat-lib=/usr/local/lib·\ | 31 | » ··<strong·class="userinput"><code>CFLAGS=-I/usr/local/include·./configure·--with-expat-lib=/usr/local/lib·\ |
32 | » ··--with-classpath-root=/usr/local/share/java/classes·</code></strong> | 32 | » ··--with-classpath-root=/usr/local/share/java/classes·</code></strong> |
33 | » </pre><p>The·shared·data·end·up·in·<code·class="filename">/usr/local/share/refdb</code>,·the·configuration·files·will·be·in·<code·class="filename">/usr/local/etc/refdb</code>.</p></div><div·class="sect3"·title="NetBSD"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59 | 33 | » </pre><p>The·shared·data·end·up·in·<code·class="filename">/usr/local/share/refdb</code>,·the·configuration·files·will·be·in·<code·class="filename">/usr/local/etc/refdb</code>.</p></div><div·class="sect3"·title="NetBSD"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59787192"></a>NetBSD</h4></div></div></div><p>The·BSD·version·of·<span·class="command"><strong>make</strong></span>·cannot·handle·the·autotools-generated·Makefiles·correctly.·Use·gmake·instead,·and·set·the·following·environment·variables·before·running·<span·class="command"><strong>./configure</strong></span>:</p><pre·class="screen"> |
34 | » ··<code·class="prompt">#~·</code> | 34 | » ··<code·class="prompt">#~·</code> |
35 | » ··<strong·class="userinput"><code>setenv·CFLAGS·"-I/usr/pkg/include·-I/usr/local/include·-L/usr/pkg/lib"</code></strong> | 35 | » ··<strong·class="userinput"><code>setenv·CFLAGS·"-I/usr/pkg/include·-I/usr/local/include·-L/usr/pkg/lib"</code></strong> |
36 | » </pre><pre·class="screen"> | 36 | » </pre><pre·class="screen"> |
37 | » ··<code·class="prompt">#~·</code> | 37 | » ··<code·class="prompt">#~·</code> |
38 | » ··<strong·class="userinput"><code>setenv·LDFLAGS·"-L/usr/pkg/lib··-R/usr/pkg/lib·-R/usr/pkg/lib/mysql"</code></strong> | 38 | » ··<strong·class="userinput"><code>setenv·LDFLAGS·"-L/usr/pkg/lib··-R/usr/pkg/lib·-R/usr/pkg/lib/mysql"</code></strong> |
39 | » </pre><pre·class="screen"> | 39 | » </pre><pre·class="screen"> |
40 | » ··<code·class="prompt">#~·</code> | 40 | » ··<code·class="prompt">#~·</code> |
41 | » ··<strong·class="userinput"><code>./configure·--with-mysqlclient-lib=/usr/pkg/lib/mysql·--with-btparse-lib=/usr/local/lib·--prefix=/usr/pkg</code></strong> | 41 | » ··<strong·class="userinput"><code>./configure·--with-mysqlclient-lib=/usr/pkg/lib/mysql·--with-btparse-lib=/usr/local/lib·--prefix=/usr/pkg</code></strong> |
42 | » </pre><p>Use·additional·options·as·needed.·The·shared·data·will·end·up·in·<code·class="filename">/usr/pkg/share/refdb</code>,·the·configuration·files·go·to·<code·class="filename">/usr/pkg/etc/refdb</code>.</p></div><div·class="sect3"·title="Solaris"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp598 | 42 | » </pre><p>Use·additional·options·as·needed.·The·shared·data·will·end·up·in·<code·class="filename">/usr/pkg/share/refdb</code>,·the·configuration·files·go·to·<code·class="filename">/usr/pkg/etc/refdb</code>.</p></div><div·class="sect3"·title="Solaris"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59816120"></a>Solaris</h4></div></div></div><p>Both·the·standard·C·compiler·and·the·standard·make·program·will·not·give·the·desired·results·when·building·RefDB.·Use·gcc·and·gmake·instead.</p></div><div·class="sect3"·title="OSX"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59817272"></a>OSX</h4></div></div></div><p>Use·<a·class="ulink"·href="http://fink.sourceforge.net"·target="_top">fink</a>·to·conveniently·install·all·the·additional·software·needed.·Then·help·<span·class="command"><strong>configure</strong></span>·find·the·fink-installed·packages·in·<code·class="filename">/sw</code>·by·setting·the·following·environment·variables:·<span·class="command"><strong>CFLAGS="-I/sw/include"·LDFL·✂ |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Installation·on·Windows NT/2000/XP</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s04.html"·title="Installation·on·Linux·and·other·Unix·variants"·/><link·rel="next"·href="ch04s06.html"·title="Installation·on·Windows 95/98/ME"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Installation·on·Windows NT/2000/XP</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s04.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation</th><td·w·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Installation·on·Windows NT/2000/XP</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch04.html"·title="Chapter 4. Installation"·/><link·rel="prev"·href="ch04s04.html"·title="Installation·on·Linux·and·other·Unix·variants"·/><link·rel="next"·href="ch04s06.html"·title="Installation·on·Windows 95/98/ME"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Installation·on·Windows NT/2000/XP</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch04s04.html">Prev</a> </td><th·width="60%"·align="center">Chapter 4. Installation</th><td·w·✂ |
3 | » ····<span·class="command"><strong>./configure·--help</strong></span> | 3 | » ····<span·class="command"><strong>./configure·--help</strong></span> |
4 | » ··</p><p>This·command·will·display·a·list·of·things·you·can·customize.·If·you·build·in·a·separate·directory,·use·the·relative·path·to·<code·class="filename">configure</code>·in·the·source·directory.·Some·important·options·are:</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>All·paths·and·URLs·in·the·following·options·should·be·entered·without·a·trailing·slash.</p></div><div·class="variablelist"><dl><dt><span·class="term">--prefix=PREFIX</span></dt><dd><p>By·default,·all·files·will·be·installed·in·the·<code·class="filename">/usr/local</code>·tree.·Use·this·option·to·use·a·different·install·root,·e.g.·<code·class="filename">/usr</code>·or·<code·class="filename">/opt</code>.</p></dd><dt><span·class="term">--datadir=DIR</span></dt><dd><p>The·data·files·will·be·installed·in·<code·class="filename">/usr/local/share/refdb</code>·unless·you·use·this·option.·The·data·will·be·installed·in·the·directory·<code·class="filename">DIR/refdb</code>.·That·is,·spe·✂ | 4 | » ··</p><p>This·command·will·display·a·list·of·things·you·can·customize.·If·you·build·in·a·separate·directory,·use·the·relative·path·to·<code·class="filename">configure</code>·in·the·source·directory.·Some·important·options·are:</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>All·paths·and·URLs·in·the·following·options·should·be·entered·without·a·trailing·slash.</p></div><div·class="variablelist"><dl><dt><span·class="term">--prefix=PREFIX</span></dt><dd><p>By·default,·all·files·will·be·installed·in·the·<code·class="filename">/usr/local</code>·tree.·Use·this·option·to·use·a·different·install·root,·e.g.·<code·class="filename">/usr</code>·or·<code·class="filename">/opt</code>.</p></dd><dt><span·class="term">--datadir=DIR</span></dt><dd><p>The·data·files·will·be·installed·in·<code·class="filename">/usr/local/share/refdb</code>·unless·you·use·this·option.·The·data·will·be·installed·in·the·directory·<code·class="filename">DIR/refdb</code>.·That·is,·spe·✂ |
5 | » ····<code·class="prompt">$~·</code> | 5 | » ····<code·class="prompt">$~·</code> |
6 | » ····<strong·class="userinput"><code>./configure·--with-refdb-url=http://yourbox.com/refdb·--with-db-server=pgsql·--with-var-dir=/var/run·\ | 6 | » ····<strong·class="userinput"><code>./configure·--with-refdb-url=http://yourbox.com/refdb·--with-db-server=pgsql·--with-var-dir=/var/run·\ |
7 | » ····--with-log-dir=/var/log·--with-libdbi-dir=/uar/local/lib·--with-docbook-xsl=/usr/local/share/sgml/stylesheets/docbook·\ | 7 | » ····--with-log-dir=/var/log·--with-libdbi-dir=/uar/local/lib·--with-docbook-xsl=/usr/local/share/sgml/stylesheets/docbook·\ |
8 | » ····--with-tei-xsl=/usr/local/share/xsl/tei</code></strong> | 8 | » ····--with-tei-xsl=/usr/local/share/xsl/tei</code></strong> |
9 | » ··</pre></li><li·class="step"·title="Step·5"><p>Run·<span·class="command"><strong>make</strong></span>.·This·will·create·the·executables·and·adapt·scripts·and·other·files·to·your·local·installation.</p></li><li·class="step"·title="Step·6"><p><span·class="command"><strong>make·install</strong></span>·will·copy·the·application·server·and·the·clients·to·<code·class="filename">/usr/local/bin</code>·and·the·data·files·to·<code·class="filename">/usr/local/share/refdb</code>·unless·you·chose·different·directories·in·the·configure·step.</p></li><li·class="step"·title="Step·7"><p>To·finish·the·installation,·please·follow·the·instructions·in·the·section·<a·class="link"·href="ch04s08.html"·title="Finishing·the·RefDB·installation">Finishing·the·RefDB·installation</a>·below.</p></li></ol></div><p>Now·you·have·everything·in·place·to·use·the·RefDB·clients·and·the·application·server·from·the·command·line.·To·install·the·application·server·as·a·service,·the·following·additional·steps·are·necessary:</p><div·class="procedure">·✂ | 9 | » ··</pre></li><li·class="step"·title="Step·5"><p>Run·<span·class="command"><strong>make</strong></span>.·This·will·create·the·executables·and·adapt·scripts·and·other·files·to·your·local·installation.</p></li><li·class="step"·title="Step·6"><p><span·class="command"><strong>make·install</strong></span>·will·copy·the·application·server·and·the·clients·to·<code·class="filename">/usr/local/bin</code>·and·the·data·files·to·<code·class="filename">/usr/local/share/refdb</code>·unless·you·chose·different·directories·in·the·configure·step.</p></li><li·class="step"·title="Step·7"><p>To·finish·the·installation,·please·follow·the·instructions·in·the·section·<a·class="link"·href="ch04s08.html"·title="Finishing·the·RefDB·installation">Finishing·the·RefDB·installation</a>·below.</p></li></ol></div><p>Now·you·have·everything·in·place·to·use·the·RefDB·clients·and·the·application·server·from·the·command·line.·To·install·the·application·server·as·a·service,·the·following·additional·steps·are·necessary:</p><div·class="procedure">·✂ |
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3 | » ····<code·class="prompt">~$·</code> | 3 | » ····<code·class="prompt">~$·</code> |
4 | » ····<strong·class="userinput"><code>refdbd·-a·-u·username·-w·password</code></strong> | 4 | » ····<strong·class="userinput"><code>refdbd·-a·-u·username·-w·password</code></strong> |
5 | » ··</pre><p>Specify·the·username·and·password·of·your·database·administrator·account.</p><p>If·the·default·setup·described·above·does·not·suit·your·needs,·please·use·the·following·procedure·instead·to·set·up·the·main·database.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>If·<code·class="filename">mysqld</code>·(the·MySQL·database·server)·is·installed·on·a·remote·box·or·if·the·security·settings·require·it,·you·may·have·to·use·the·<code·class="option">-h·<em·class="replaceable"><code>hostname</code></em></code>·and/or·the·<code·class="option">-u·<em·class="replaceable"><code>username</code></em></code>/<code·class="option">-p·<em·class="replaceable"><code>password</code></em></code>·options·to·run·the·<code·class="filename">mysql</code>·client·as·shown·below·(most·fresh·MySQL·installations·use·"root"·with·no·password·as·the·default·database·administrator).·<code·class="filename">mysqld</code>·needs·to·be·up·and·running·and·you·need·the·appropri·✂ | 5 | » ··</pre><p>Specify·the·username·and·password·of·your·database·administrator·account.</p><p>If·the·default·setup·described·above·does·not·suit·your·needs,·please·use·the·following·procedure·instead·to·set·up·the·main·database.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>If·<code·class="filename">mysqld</code>·(the·MySQL·database·server)·is·installed·on·a·remote·box·or·if·the·security·settings·require·it,·you·may·have·to·use·the·<code·class="option">-h·<em·class="replaceable"><code>hostname</code></em></code>·and/or·the·<code·class="option">-u·<em·class="replaceable"><code>username</code></em></code>/<code·class="option">-p·<em·class="replaceable"><code>password</code></em></code>·options·to·run·the·<code·class="filename">mysql</code>·client·as·shown·below·(most·fresh·MySQL·installations·use·"root"·with·no·password·as·the·default·database·administrator).·<code·class="filename">mysqld</code>·needs·to·be·up·and·running·and·you·need·the·appropri·✂ |
6 | » » <code·class="prompt">~$·</code> | 6 | » » <code·class="prompt">~$·</code> |
7 | » » <strong·class="userinput"><code>mysql·-u·root·-e·"CREATE·DATABASE·refdb"</code></strong> | 7 | » » <strong·class="userinput"><code>mysql·-u·root·-e·"CREATE·DATABASE·refdb"</code></strong> |
8 | » ······</pre></li><li·class="listitem"><p>Then·create·the·tables·and·fill·in·the·data.·For·MySQL·older·than·4.1,·run:</p><pre·class="screen"> | 8 | » ······</pre></li><li·class="listitem"><p>Then·create·the·tables·and·fill·in·the·data.·For·MySQL·older·than·4.1,·run:</p><pre·class="screen"> |
9 | » » <code·class="prompt">~$·</code> | 9 | » » <code·class="prompt">~$·</code> |
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3 | local·refdb····························crypt | 3 | local·refdb····························crypt |
4 | local·refs······························crypt | 4 | local·refs······························crypt |
5 | host··refdb··192.168.1.0·255.255.255.0·crypt | 5 | host··refdb··192.168.1.0·255.255.255.0·crypt |
6 | host··refs····192.168.1.0·255.255.255.0·crypt | 6 | host··refs····192.168.1.0·255.255.255.0·crypt |
7 | » </pre><p>The·default·<code·class="filename">pg_hba.conf</code>·file·allows·local·access·to·all·databases·without·password·protection.·This·may·not·be·what·you·want.·The·file·contains·a·bunch·of·helpful·comments,·though.·You·may·also·want·to·peruse·the·PostgreSQL·documentation·for·more·information·about·host-based·access·control.</p></div></div><div·class="sect2"·title="Remove·users"><div·class="titlepage"><div><div><h3·class="title"><a·id="idp592 | 7 | » </pre><p>The·default·<code·class="filename">pg_hba.conf</code>·file·allows·local·access·to·all·databases·without·password·protection.·This·may·not·be·what·you·want.·The·file·contains·a·bunch·of·helpful·comments,·though.·You·may·also·want·to·peruse·the·PostgreSQL·documentation·for·more·information·about·host-based·access·control.</p></div></div><div·class="sect2"·title="Remove·users"><div·class="titlepage"><div><div><h3·class="title"><a·id="idp59294520"></a>Remove·users</h3></div></div></div><p>This·is·done·with·the·<a·class="link"·href="re06.html#app-a-command-deleteuser"·title="deleteuser">deleteuser</a>·command.·The·access·rights·will·be·revoked·for·the·specified·username·and·database.·No·other·access·rights·will·be·modified.·The·following·command·will·revoke·the·access·rights·of·user·"jack"·on·the·database·"foo".</p><pre·class="screen"><code·class="prompt">refdba:·</code>deleteuser·-d·foo·jack</pre><p>Keep·in·mind·that·user·"jack"·still·can·access·the·refdb·main·database·<code·class="filename">refdb</code·✂ |
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3 | local·refdb····························crypt | 3 | local·refdb····························crypt |
4 | local·refs······························crypt | 4 | local·refs······························crypt |
5 | host··refdb··192.168.1.0·255.255.255.0·crypt | 5 | host··refdb··192.168.1.0·255.255.255.0·crypt |
6 | host··refs····192.168.1.0·255.255.255.0·crypt | 6 | host··refs····192.168.1.0·255.255.255.0·crypt |
7 | » ····</pre><p>As·mentioned·previously,·only·the·host·where·refdbd·runs·is·relevant·for·the·host·or·network·entries·in·the·configuration·file.</p><p>Make·sure·to·read·the·PostgreSQL·documentation·to·get·your·access·control·right.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>Please·keep·in·mind·that·<code·class="filename">postmaster</code>·(the·PostgreSQL·database·server·parent·process)·needs·to·be·started·with·the·<code·class="option">-i</code>·option·to·accept·remote·connections·at·all.·Most·default·installations·do·not·use·this·switch·to·increase·security.</p></div></li><li·class="listitem"><p>If·you·install·and·run·PostgreSQL·yourself,·you·should·not·use·the·default·database·administrator·account.·The·name·(pgsql)·is·widely·known·and·by·default·this·account·is·not·password-protected.·To·make·your·database·server·secure,·please·create·a·new·database·administrator·account·with·a·different·name·and·specify·a·password.</p></li></ul></div></div>·✂ | 7 | » ····</pre><p>As·mentioned·previously,·only·the·host·where·refdbd·runs·is·relevant·for·the·host·or·network·entries·in·the·configuration·file.</p><p>Make·sure·to·read·the·PostgreSQL·documentation·to·get·your·access·control·right.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>Please·keep·in·mind·that·<code·class="filename">postmaster</code>·(the·PostgreSQL·database·server·parent·process)·needs·to·be·started·with·the·<code·class="option">-i</code>·option·to·accept·remote·connections·at·all.·Most·default·installations·do·not·use·this·switch·to·increase·security.</p></div></li><li·class="listitem"><p>If·you·install·and·run·PostgreSQL·yourself,·you·should·not·use·the·default·database·administrator·account.·The·name·(pgsql)·is·widely·known·and·by·default·this·account·is·not·password-protected.·To·make·your·database·server·secure,·please·create·a·new·database·administrator·account·with·a·different·name·and·specify·a·password.</p></li></ul></div></div>·✂ |
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3 | » <code·class="prompt">refdbc:·</code> | 3 | » <code·class="prompt">refdbc:·</code> |
4 | » <strong·class="userinput"><code>getref·-t·risx·-s·NOHOLES·-o·all.ris·:ID:>0</code></strong> | 4 | » <strong·class="userinput"><code>getref·-t·risx·-s·NOHOLES·-o·all.ris·:ID:>0</code></strong> |
5 | ······</pre><p>The·<code·class="option">-s·NOHOLES</code>·option·will·dump·skeleton·references·for·references·that·you·deleted·from·the·database.·This·simplifies·re-creating·the·same·ID·values·in·a·new·database.</p></div><div·class="sect2"·title="Creating·a·SQL·dump"><div·class="titlepage"><div><div><h3·class="title"><a·id="idp59 | 5 | ······</pre><p>The·<code·class="option">-s·NOHOLES</code>·option·will·dump·skeleton·references·for·references·that·you·deleted·from·the·database.·This·simplifies·re-creating·the·same·ID·values·in·a·new·database.</p></div><div·class="sect2"·title="Creating·a·SQL·dump"><div·class="titlepage"><div><div><h3·class="title"><a·id="idp59024824"></a>Creating·a·SQL·dump</h3></div></div></div><p>This·is·best·done·with·the·command·line·tools·shipped·with·you·database·server.·You·should·consult·the·manual·of·your·database·server,·but·the·following·commands·should·be·all·it·takes:</p><p>If·you·run·MySQL·as·your·database·server,·run:</p><pre·class="screen"> |
6 | » <code·class="prompt">$·</code> | 6 | » <code·class="prompt">$·</code> |
7 | » <strong·class="userinput"><code>mysqldump·-u·root·-p·--opt·dbname·>·dbname.dump</code></strong> | 7 | » <strong·class="userinput"><code>mysqldump·-u·root·-p·--opt·dbname·>·dbname.dump</code></strong> |
8 | ······</pre><p>This·assumes·that·"root"·is·the·name·of·your·database·administrator·account·and·"dbname"·is·the·name·of·your·database.</p><p>If·you·run·PostgreSQL·instead,·use·this·command:</p><pre·class="screen"> | 8 | ······</pre><p>This·assumes·that·"root"·is·the·name·of·your·database·administrator·account·and·"dbname"·is·the·name·of·your·database.</p><p>If·you·run·PostgreSQL·instead,·use·this·command:</p><pre·class="screen"> |
9 | » <code·class="prompt">$·</code> | 9 | » <code·class="prompt">$·</code> |
10 | » <strong·class="userinput"><code>pg_dump·-u·pgsql·-C·dbname·>·dbname.dump</code></strong> | 10 | » <strong·class="userinput"><code>pg_dump·-u·pgsql·-C·dbname·>·dbname.dump</code></strong> |
11 | ······</pre><p>This·assumes·that·"pgsql"·is·the·name·of·your·database·administrator·account·and·"dbname"·is·the·name·of·your·database.</p><p>To·restore·a·database·from·a·dump,·use·the·command·line·clients·shipped·with·your·database·server.·For·MySQL,·the·required·sequence·is:</p><pre·class="screen"> | 11 | ······</pre><p>This·assumes·that·"pgsql"·is·the·name·of·your·database·administrator·account·and·"dbname"·is·the·name·of·your·database.</p><p>To·restore·a·database·from·a·dump,·use·the·command·line·clients·shipped·with·your·database·server.·For·MySQL,·the·required·sequence·is:</p><pre·class="screen"> |
12 | » <code·class="prompt">$·</code> | 12 | » <code·class="prompt">$·</code> |
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3 | » <code·class="prompt">~$·</code> | 3 | » <code·class="prompt">~$·</code> |
4 | » <strong·class="userinput"><code>refdbc·-d·refs·-t·ris·-s·AB·-C·getref·:AU:=Miller</code></strong> | 4 | » <strong·class="userinput"><code>refdbc·-d·refs·-t·ris·-s·AB·-C·getref·:AU:=Miller</code></strong> |
5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch06s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch06.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch06s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">The·interactive·mode·of·refdba·and·refdbc </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> The·non-interactive·mode·of·refdbib</td></tr></table></div></body></html> | 5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch06s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch06.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch06s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">The·interactive·mode·of·refdba·and·refdbc </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> The·non-interactive·mode·of·refdbib</td></tr></table></div></body></html> |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 7. Data·input</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch06s05.html"·title="Common·command-line·options·for·all·clients"·/><link·rel="next"·href="ch07s02.html"·title="The·Emacs·helpers"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 7. Data·input</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch06s05.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a·accesskey="n"·href·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 7. Data·input</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch06s05.html"·title="Common·command-line·options·for·all·clients"·/><link·rel="next"·href="ch07s02.html"·title="The·Emacs·helpers"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 7. Data·input</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch06s05.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a·accesskey="n"·href·✂ |
3 | TY··-·BOOK·················<a·id="type"></a><img·src="images/callouts/2.png"·alt="2"·border="0"·/>· | 3 | TY··-·BOOK·················<a·id="type"></a><img·src="images/callouts/2.png"·alt="2"·border="0"·/>· |
4 | AU··-·Hoenicka,M.··········<a·id="contents"></a><img·src="images/callouts/3.png"·alt="3"·border="0"·/> | 4 | AU··-·Hoenicka,M.··········<a·id="contents"></a><img·src="images/callouts/3.png"·alt="3"·border="0"·/> |
5 | TI··-·The·RefDB·manual | 5 | TI··-·The·RefDB·manual |
6 | PY··-·2001 | 6 | PY··-·2001 |
7 | ER··-······················<a·id="end"></a><img·src="images/callouts/4.png"·alt="4"·border="0"·/></pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#newline"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·empty·line·generated·by·a·linefeed·character·(0x0A)·that·precedes·every·RIS·citation,·even·at·the·start·of·a·RIS·file.</p></td></tr><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#type"><img·src="images/callouts/2.png"·alt="2"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·mandatory·first·tag,·the·type·specifier.·In·this·case,·we're·looking·at·a·BOOK·entry.</p></td></tr><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#contents"><img·src="images/callouts/3.png"·alt="3"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·and·the·following·lines·are·the·contents·proper·of·the·citation.·All·additional·tags·would·go·✂ | 7 | ER··-······················<a·id="end"></a><img·src="images/callouts/4.png"·alt="4"·border="0"·/></pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#newline"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·empty·line·generated·by·a·linefeed·character·(0x0A)·that·precedes·every·RIS·citation,·even·at·the·start·of·a·RIS·file.</p></td></tr><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#type"><img·src="images/callouts/2.png"·alt="2"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·mandatory·first·tag,·the·type·specifier.·In·this·case,·we're·looking·at·a·BOOK·entry.</p></td></tr><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#contents"><img·src="images/callouts/3.png"·alt="3"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·and·the·following·lines·are·the·contents·proper·of·the·citation.·All·additional·tags·would·go·✂ |
8 | TY··-·JOUR | 8 | TY··-·JOUR |
9 | T1··-·T-lymphocytes·from·normal·human·peritoneum·are·phenotypically·/ | 9 | T1··-·T-lymphocytes·from·normal·human·peritoneum·are·phenotypically·/ |
10 | different·from·their·counterparts·in·peripheral·blood·and·CD3-·lymphocyte·/ | 10 | different·from·their·counterparts·in·peripheral·blood·and·CD3-·lymphocyte·/ |
11 | subsets·contain·mRNA·for·the·recombination·activating·gene·RAG-1 | 11 | subsets·contain·mRNA·for·the·recombination·activating·gene·RAG-1 |
12 | A1··-·Hartmann,J. | 12 | A1··-·Hartmann,J. |
13 | A1··-·Maassen,V. | 13 | A1··-·Maassen,V. |
14 | A1··-·Rieber,P. | 14 | A1··-·Rieber,P. |
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3 | » ··<a·class="link"·href="re17.html"·title="refdb_dos2unix">refdb_dos2unix</a> | 3 | » ··<a·class="link"·href="re17.html"·title="refdb_dos2unix">refdb_dos2unix</a> |
4 | » </span></dt><dd><p>A·simple·(maybe·<span·class="emphasis"><em>too</em></span>·simple)·shell·script·to·convert·text·files·like·RIS·documents·from·DOS-style·line·endings·to·Unix-style·line·endings.·Most·RefDB·tools·need·their·input·files·with·Unix-style·line·endings.·This·is·a·valuable·tool·to·import·reference·databases·from·Windows·reference·managers.</p></dd><dt><span·class="term"> | 4 | » </span></dt><dd><p>A·simple·(maybe·<span·class="emphasis"><em>too</em></span>·simple)·shell·script·to·convert·text·files·like·RIS·documents·from·DOS-style·line·endings·to·Unix-style·line·endings.·Most·RefDB·tools·need·their·input·files·with·Unix-style·line·endings.·This·is·a·valuable·tool·to·import·reference·databases·from·Windows·reference·managers.</p></dd><dt><span·class="term"> |
5 | » ··<a·class="link"·href="re16.html"·title="med2ris">med2ris</a> | 5 | » ··<a·class="link"·href="re16.html"·title="med2ris">med2ris</a> |
6 | » </span></dt><dd><p>A·tool·to·convert·Pubmed·data·in·both·the·tagged·and·the·XML·format·to·RIS</p></dd><dt><span·class="term"> | 6 | » </span></dt><dd><p>A·tool·to·convert·Pubmed·data·in·both·the·tagged·and·the·XML·format·to·RIS</p></dd><dt><span·class="term"> |
7 | » ··<a·class="link"·href="re14.html"·title="en2ris">en2ris</a> | 7 | » ··<a·class="link"·href="re14.html"·title="en2ris">en2ris</a> |
8 | » </span></dt><dd><p>A·tool·to·convert·EndNote·"RIS"·exported·data·to·RIS</p></dd><dt><span·class="term"> | 8 | » </span></dt><dd><p>A·tool·to·convert·EndNote·"RIS"·exported·data·to·RIS</p></dd><dt><span·class="term"> |
9 | » ··<a·class="link"·href="re12.html"·title="bib2ris">bib2ris</a> | 9 | » ··<a·class="link"·href="re12.html"·title="bib2ris">bib2ris</a> |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 8. Reference·management</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch07s06.html"·title="Input·data·mangling"·/><link·rel="next"·href="ch08s02.html"·title="Find·and·view·references"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 8. Reference·management</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch07s06.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a·accesskey="n"·h·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 8. Reference·management</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch07s06.html"·title="Input·data·mangling"·/><link·rel="next"·href="ch08s02.html"·title="Find·and·view·references"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 8. Reference·management</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch07s06.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a·accesskey="n"·h·✂ |
3 | » ······<code·class="prompt">~#·</code> | 3 | » ······<code·class="prompt">~#·</code> |
4 | » ······<strong·class="userinput"><code>med2ris.pl·-o·foo.ris·pm*</code></strong> | 4 | » ······<strong·class="userinput"><code>med2ris.pl·-o·foo.ris·pm*</code></strong> |
5 | » ····</pre><p>We·could·now·open·<code·class="filename">foo.ris</code>·in·our·favourite·text·editor·and·make·a·few·changes.·We·could·enter·additional·keywords,·provide·personal·notes·(e.g.·why·we·currently·find·the·article·worth·the·paper·it·is·printed·on,·something·that·may·not·be·apparent·a·few·months·later),·or·specify·the·reprint·status·and·availability.</p></li><li·class="listitem"><p>Then·we·switch·to·(or·start)·the·refdbc·command·line·client·and·type·the·following·command·at·the·prompt·to·add·the·references·to·the·database·<code·class="filename">bar</code>·(use·the·full·path·to·<code·class="filename">foo.ris</code>·if·necessary):</p><pre·class="screen"> | 5 | » ····</pre><p>We·could·now·open·<code·class="filename">foo.ris</code>·in·our·favourite·text·editor·and·make·a·few·changes.·We·could·enter·additional·keywords,·provide·personal·notes·(e.g.·why·we·currently·find·the·article·worth·the·paper·it·is·printed·on,·something·that·may·not·be·apparent·a·few·months·later),·or·specify·the·reprint·status·and·availability.</p></li><li·class="listitem"><p>Then·we·switch·to·(or·start)·the·refdbc·command·line·client·and·type·the·following·command·at·the·prompt·to·add·the·references·to·the·database·<code·class="filename">bar</code>·(use·the·full·path·to·<code·class="filename">foo.ris</code>·if·necessary):</p><pre·class="screen"> |
6 | » ······<code·class="prompt">refdbc:·</code> | 6 | » ······<code·class="prompt">refdbc:·</code> |
7 | » ······<strong·class="userinput"><code>addref·-d·bar·foo.ris</code></strong> | 7 | » ······<strong·class="userinput"><code>addref·-d·bar·foo.ris</code></strong> |
8 | » ····</pre></li></ul></div></div><div·class="simplesect"·title="Example·2"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp591 | 8 | » ····</pre></li></ul></div></div><div·class="simplesect"·title="Example·2"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp59163064"></a>Example·2</h4></div></div></div><p>You·feel·the·urge·to·import·MODS·data,·an·XML·data·format·developed·by·the·<a·class="ulink"·href="http://www.loc.gov"·target="_top">Library·of·Congress</a>.·RefDB·does·not·support·this·format·natively·or·via·converters·at·this·time,·so·you'll·have·to·resort·to·an·external·tool.·Chris·Putnam's·<a·class="ulink"·href="http://www.scripps.edu/~cdputnam/software/bibutils/bibutils.html"·target="_top">bibutils</a>·package·comes·to·the·rescue,·as·it·provides·a·set·of·command-line·tools·to·interconvert·a·number·of·bibliography·data·formats.·Both·RIS·and·MODS·are·supported,·so·we·have·all·it·takes.·The·following·command·imports·the·MODS·data·into·your·default·database·in·a·single·step,·although·you·may·first·want·to·check·the·output·of·the·converter·before·going·ahead:</p><pre·class="screen"> |
9 | » ······<code·class="prompt">#·</code><strong·class="userinput"><code>xml2ris·modsdata.xml|refdbc·-C·addref</code></strong> | 9 | » ······<code·class="prompt">#·</code><strong·class="userinput"><code>xml2ris·modsdata.xml|refdbc·-C·addref</code></strong> |
10 | » ····</pre></div></div><div·class="sect2"·title="risx·datasets"><div·class="titlepage"><div><div><h3·class="title"><a·id="sect-add-risx-datasets"></a>risx·datasets</h3></div></div></div><p>If·you·prefer·the·XML·data·format·instead,·use·the·<a·class="link"·href="re11.html#app-c-command-addref"·title="addref"><span·class="command"><strong>addref</strong></span></a>·with·the·<code·class="option">-A·risx</code>·switch.·As·the·data·are·imported·using·a·non-validating·XML·parser·you·should·make·sure·the·documents·are·valid,·either·by·using·some·nifty·feature·of·your·XML·editor·or·by·running·the·document·through·a·suitable·tool·like·<span·class="command"><strong>xmllint</strong></span>.</p><p>Each·entry·in·a·risx·document·can·specify·a·numerical·ID·value·and·an·alphanumeric·citation·key.·The·ID·is·ignored·by·the·import·routines.·If·you·want·to·update·or·replace·an·entry·by·ID,·you·have·to·use·the·<a·class="link"·href="re11.html#app-c-command-updateref"·title="updateref"><span·class="command"><strong>updateref</stron·✂ | 10 | » ····</pre></div></div><div·class="sect2"·title="risx·datasets"><div·class="titlepage"><div><div><h3·class="title"><a·id="sect-add-risx-datasets"></a>risx·datasets</h3></div></div></div><p>If·you·prefer·the·XML·data·format·instead,·use·the·<a·class="link"·href="re11.html#app-c-command-addref"·title="addref"><span·class="command"><strong>addref</strong></span></a>·with·the·<code·class="option">-A·risx</code>·switch.·As·the·data·are·imported·using·a·non-validating·XML·parser·you·should·make·sure·the·documents·are·valid,·either·by·using·some·nifty·feature·of·your·XML·editor·or·by·running·the·document·through·a·suitable·tool·like·<span·class="command"><strong>xmllint</strong></span>.</p><p>Each·entry·in·a·risx·document·can·specify·a·numerical·ID·value·and·an·alphanumeric·citation·key.·The·ID·is·ignored·by·the·import·routines.·If·you·want·to·update·or·replace·an·entry·by·ID,·you·have·to·use·the·<a·class="link"·href="re11.html#app-c-command-updateref"·title="updateref"><span·class="command"><strong>updateref</stron·✂ |
11 | » ······<code·class="prompt">~#·</code> | 11 | » ······<code·class="prompt">~#·</code> |
12 | » ······<strong·class="userinput"><code>onsgmls·-s·/usr/local/share/refdb/declarations/xml.dcl·foo.xml</code></strong> | 12 | » ······<strong·class="userinput"><code>onsgmls·-s·/usr/local/share/refdb/declarations/xml.dcl·foo.xml</code></strong> |
13 | » ······<code·class="prompt">~#·</code> | 13 | » ······<code·class="prompt">~#·</code> |
14 | » ······<strong·class="userinput"><code>xmllint·--noout·--dtdvalid·"http://refdb.sourceforge.net/dtd/risx/risx.dtd"·foo.xml</code></strong> | 14 | » ······<strong·class="userinput"><code>xmllint·--noout·--dtdvalid·"http://refdb.sourceforge.net/dtd/risx/risx.dtd"·foo.xml</code></strong> |
15 | » ····</pre><p>No·news·is·good·news·in·both·cases:·If·your·document·is·valid,·the·validator·will·not·output·anything.·If·you·do·get·some·error·messages,·go·back·to·your·editor·and·fix·the·problems.</p></li><li·class="listitem"><p>Now·switch·to·refdbc·and·run·the·following·command·to·add·the·references·in·<code·class="filename">foo.xml</code>·to·the·reference·database·<code·class="filename">bar</code>:</p><pre·class="screen"> | 15 | » ····</pre><p>No·news·is·good·news·in·both·cases:·If·your·document·is·valid,·the·validator·will·not·output·anything.·If·you·do·get·some·error·messages,·go·back·to·your·editor·and·fix·the·problems.</p></li><li·class="listitem"><p>Now·switch·to·refdbc·and·run·the·following·command·to·add·the·references·in·<code·class="filename">foo.xml</code>·to·the·reference·database·<code·class="filename">bar</code>:</p><pre·class="screen"> |
16 | » ······<code·class="prompt">refdbc:·</code> | 16 | » ······<code·class="prompt">refdbc:·</code> |
17 | » ······<strong·class="userinput"><code>addref·-A·risx·-d·bar·foo.xml</code></strong> | 17 | » ······<strong·class="userinput"><code>addref·-A·risx·-d·bar·foo.xml</code></strong> |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Delete·references</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch08.html"·title="Chapter 8. Reference·management"·/><link·rel="prev"·href="ch08s02.html"·title="Find·and·view·references"·/><link·rel="next"·href="ch08s04.html"·title="Edit·references"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Delete·references</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 8. Reference·management</th><td·width="20%"·align="right"> <a·accesskey="n"·href="ch08s04·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Delete·references</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch08.html"·title="Chapter 8. Reference·management"·/><link·rel="prev"·href="ch08s02.html"·title="Find·and·view·references"·/><link·rel="next"·href="ch08s04.html"·title="Edit·references"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Delete·references</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 8. Reference·management</th><td·width="20%"·align="right"> <a·accesskey="n"·href="ch08s04·✂ |
3 | » ····<code·class="prompt">refdbc:·</code> | 3 | » ····<code·class="prompt">refdbc:·</code> |
4 | » ····<strong·class="userinput"><code>getref·-t·ris·-s·ID·-o·tobekilled.ris·-d·bar·":AU:=Doe,J."</code></strong> | 4 | » ····<strong·class="userinput"><code>getref·-t·ris·-s·ID·-o·tobekilled.ris·-d·bar·":AU:=Doe,J."</code></strong> |
5 | » ··</pre><p>The·result·is,·once·again,·a·file·with·plain·text·that·we·can·check·and·edit·to·our·needs.·E.g.·if·you·want·to·keep·one·or·two·publications·in·the·list,·just·delete·their·entries·in·the·intermediate·file.</p></li><li·class="listitem"><p>Then·we·use·the·<a·class="link"·href="re11.html#app-c-command-deleteref"·title="deleteref">deleteref</a>·command·to·actually·delete·the·references·associated·with·our·list·of·IDs:</p><pre·class="screen"·width="60"> | 5 | » ··</pre><p>The·result·is,·once·again,·a·file·with·plain·text·that·we·can·check·and·edit·to·our·needs.·E.g.·if·you·want·to·keep·one·or·two·publications·in·the·list,·just·delete·their·entries·in·the·intermediate·file.</p></li><li·class="listitem"><p>Then·we·use·the·<a·class="link"·href="re11.html#app-c-command-deleteref"·title="deleteref">deleteref</a>·command·to·actually·delete·the·references·associated·with·our·list·of·IDs:</p><pre·class="screen"·width="60"> |
6 | » ····<code·class="prompt">refdbc:·</code> | 6 | » ····<code·class="prompt">refdbc:·</code> |
7 | » ····<strong·class="userinput"><code>deleteref·-f·tobekilled.ris·-d·bar</code></strong> | 7 | » ····<strong·class="userinput"><code>deleteref·-f·tobekilled.ris·-d·bar</code></strong> |
8 | » ··</pre></li></ul></div></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch08s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch08.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch08s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Find·and·view·references </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Edit·references</td></tr></table></div></body></html> | 8 | » ··</pre></li></ul></div></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch08s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch08.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch08s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Find·and·view·references </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Edit·references</td></tr></table></div></body></html> |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Create·periodical·synonyms</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch08.html"·title="Chapter 8. Reference·management"·/><link·rel="prev"·href="ch08s07.html"·title="Global·edit·references"·/><link·rel="next"·href="ch08s09.html"·title="Character·encoding·issues"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Create·periodical·synonyms</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s07.html">Prev</a> </td><th·width="60%"·align="center">Chapter 8. Reference·management</th><td·width="20%"·align="right"> <a·a·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Create·periodical·synonyms</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch08.html"·title="Chapter 8. Reference·management"·/><link·rel="prev"·href="ch08s07.html"·title="Global·edit·references"·/><link·rel="next"·href="ch08s09.html"·title="Character·encoding·issues"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Create·periodical·synonyms</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s07.html">Prev</a> </td><th·width="60%"·align="center">Chapter 8. Reference·management</th><td·width="20%"·align="right"> <a·a·✂ |
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2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 9. Notes·management</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch08s11.html"·title="Interaction·with·external·applications"·/><link·rel="next"·href="ch09s02.html"·title="Find·and·view·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 9. Notes·management</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s11.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a··✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Chapter 9. Notes·management</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="pt03.html"·title="Part III. User·manual"·/><link·rel="prev"·href="ch08s11.html"·title="Interaction·with·external·applications"·/><link·rel="next"·href="ch09s02.html"·title="Find·and·view·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Chapter 9. Notes·management</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch08s11.html">Prev</a> </td><th·width="60%"·align="center">Part III. User·manual</th><td·width="20%"·align="right"> <a··✂ |
3 | » <code·class="prompt">refdbc:·</code> | 3 | » <code·class="prompt">refdbc:·</code> |
4 | » <strong·class="userinput"><code>addnote·-d·bar·foo.xml</code></strong> | 4 | » <strong·class="userinput"><code>addnote·-d·bar·foo.xml</code></strong> |
5 | ······</pre></div></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch08s11.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="pt03.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s02.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Interaction·with·external·applications </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Find·and·view·extended·notes</td></tr></table></div></body></html> | 5 | ······</pre></div></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch08s11.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="pt03.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s02.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Interaction·with·external·applications </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Find·and·view·extended·notes</td></tr></table></div></body></html> |
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1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> | 1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> |
2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Delete·extended·notes</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s02.html"·title="Find·and·view·extended·notes"·/><link·rel="next"·href="ch09s04.html"·title="Edit·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Delete·extended·notes</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. Notes·management</th><td·width="20%"·align="right"> <a·accesskey="n"·href=·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Delete·extended·notes</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s02.html"·title="Find·and·view·extended·notes"·/><link·rel="next"·href="ch09s04.html"·title="Edit·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Delete·extended·notes</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s02.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. Notes·management</th><td·width="20%"·align="right"> <a·accesskey="n"·href=·✂ |
3 | » <code·class="prompt">refdbc:·</code> | 3 | » <code·class="prompt">refdbc:·</code> |
4 | » <strong·class="userinput"><code>deletenote·-d·bar·4·132</code></strong> | 4 | » <strong·class="userinput"><code>deletenote·-d·bar·4·132</code></strong> |
5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch09s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch09.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Find·and·view·extended·notes </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Edit·extended·notes</td></tr></table></div></body></html> | 5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch09s02.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch09.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s04.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Find·and·view·extended·notes </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Edit·extended·notes</td></tr></table></div></body></html> |
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1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> | 1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> |
2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Link·existing·notes·to·other·objects·in·the·database</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s04.html"·title="Edit·extended·notes"·/><link·rel="next"·href="ch09s06.html"·title="To·share·or·not·to·share·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Link·existing·notes·to·other·objects·in·the·database</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s04.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. N·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>Link·existing·notes·to·other·objects·in·the·database</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s04.html"·title="Edit·extended·notes"·/><link·rel="next"·href="ch09s06.html"·title="To·share·or·not·to·share·extended·notes"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">Link·existing·notes·to·other·objects·in·the·database</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s04.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. N·✂ |
3 | » <code·class="prompt">refdbc:·</code> | 3 | » <code·class="prompt">refdbc:·</code> |
4 | » <strong·class="userinput"><code>addlink·-d·bar·:NID:=5·:CK:=Miller1999·:CK:=Doe2000</code></strong> | 4 | » <strong·class="userinput"><code>addlink·-d·bar·:NID:=5·:CK:=Miller1999·:CK:=Doe2000</code></strong> |
5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch09s04.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch09.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s06.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Edit·extended·notes </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> To·share·or·not·to·share·extended·notes</td></tr></table></div></body></html> | 5 | ······</pre></div></div><div·class="navfooter"><hr·/><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="ch09s04.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="ch09.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="ch09s06.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Edit·extended·notes </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> To·share·or·not·to·share·extended·notes</td></tr></table></div></body></html> |
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1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> | 1 | <?xml·version="1.0"·encoding="UTF-8"·standalone="no"?> |
2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>To·share·or·not·to·share·extended·notes</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s05.html"·title="Link·existing·notes·to·other·objects·in·the·database"·/><link·rel="next"·href="ch10.html"·title="Chapter 10. Bibliographies"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">To·share·or·not·to·share·extended·notes</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s05.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. Notes·mana·✂ | 2 | <!DOCTYPE·html·PUBLIC·"-//W3C//DTD·XHTML·1.0·Transitional//EN"·"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html·xmlns="http://www.w3.org/1999/xhtml"><head><meta·http-equiv="Content-Type"·content="text/html;·charset=UTF-8"·/><title>To·share·or·not·to·share·extended·notes</title><link·rel="stylesheet"·type="text/css"·href="manual.css"·/><meta·name="generator"·content="DocBook·XSL·Stylesheets·V1.76.1"·/><link·rel="home"·href="index.html"·title="RefDB·handbook"·/><link·rel="up"·href="ch09.html"·title="Chapter 9. Notes·management"·/><link·rel="prev"·href="ch09s05.html"·title="Link·existing·notes·to·other·objects·in·the·database"·/><link·rel="next"·href="ch10.html"·title="Chapter 10. Bibliographies"·/></head><body><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">To·share·or·not·to·share·extended·notes</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="ch09s05.html">Prev</a> </td><th·width="60%"·align="center">Chapter 9. Notes·mana·✂ |
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47 | » ··</pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#list3-multixref"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·additional·<code·class="sgmltag-element">xref</code>·element·which·is·mandatory·in·multiple·citations.·The·<code·class="sgmltag-attribute">linkend</code>·specifies·the·target·of·a·link,·which·by·convention·could·be·the·first·of·the·following·references.·Note·that·the·attribute·value·does·not·have·a·trailing·type·specifier.·The·element·must·have·a·<code·class="sgmltag-attribute">role</code>·attribute·with·the·value·<code·class="sgmltag-attvalue">MULTIXREF</code>.·You·also·have·to·provide·an·unique·value·for·the·<code·class="sgmltag-attribute">endterm</code>·attribute.·This·specifies·the·ID·value·that·will·be·used·in·the·corresponding·element·in·the·RefDB-generated·bibliography·that·contains·the·preformatted·string·for·the·multiple·citation.·The·ID·valu·✂ | 47 | » ··</pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#list3-multixref"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·additional·<code·class="sgmltag-element">xref</code>·element·which·is·mandatory·in·multiple·citations.·The·<code·class="sgmltag-attribute">linkend</code>·specifies·the·target·of·a·link,·which·by·convention·could·be·the·first·of·the·following·references.·Note·that·the·attribute·value·does·not·have·a·trailing·type·specifier.·The·element·must·have·a·<code·class="sgmltag-attribute">role</code>·attribute·with·the·value·<code·class="sgmltag-attvalue">MULTIXREF</code>.·You·also·have·to·provide·an·unique·value·for·the·<code·class="sgmltag-attribute">endterm</code>·attribute.·This·specifies·the·ID·value·that·will·be·used·in·the·corresponding·element·in·the·RefDB-generated·bibliography·that·contains·the·preformatted·string·for·the·multiple·citation.·The·ID·valu·✂ |
48 | <ptr·type="MULTIXREF"·targOrder="U"·target="IMTHEFIRST"·TEIform="ptr"/><a·id="list4-multixref"></a><img·src="images/callouts/1.png"·alt="1"·border="0"·/> | 48 | <ptr·type="MULTIXREF"·targOrder="U"·target="IMTHEFIRST"·TEIform="ptr"/><a·id="list4-multixref"></a><img·src="images/callouts/1.png"·alt="1"·border="0"·/> |
49 | <ptr·targOrder="U"·target="ID1-X"·TEIform="ptr"/>·····················<a·id="list4-xref"></a><img·src="images/callouts/2.png"·alt="2"·border="0"·/> | 49 | <ptr·targOrder="U"·target="ID1-X"·TEIform="ptr"/>·····················<a·id="list4-xref"></a><img·src="images/callouts/2.png"·alt="2"·border="0"·/> |
50 | <ptr·targOrder="U"·target="LITIBP-ID21-X"·TEIform="ptr"/> | 50 | <ptr·targOrder="U"·target="LITIBP-ID21-X"·TEIform="ptr"/> |
51 | <ptr·targOrder="U"·target="ID5-X"·TEIform="ptr"/> | 51 | <ptr·targOrder="U"·target="ID5-X"·TEIform="ptr"/> |
52 | </seg> | 52 | </seg> |
53 | » ··</pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#list4-multixref"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·additional·<code·class="sgmltag-element">ptr</code>·element·which·is·mandatory·in·multiple·citations.·The·element·must·have·a·<code·class="sgmltag-attribute">type</code>·attribute·with·the·value·<code·class="sgmltag-attvalue">MULTIXREF</code>.·You·also·have·to·provide·an·unique·value·for·the·<code·class="sgmltag-attribute">target</code>·attribute.·This·specifies·the·ID·value·that·will·be·used·in·the·corresponding·element·in·the·RefDB-generated·bibliography.·The·ID·string·has·to·start·with·"IM".·In·contrast·to·DocBook·elements,·there·is·no·way·to·specify·where·a·link·should·point·to.·The·RefDB·XSL·stylesheets·will·use·the·first·bibliographic·entry·referenced·in·a·multiple·citation·as·the·link·target.</p></td></tr><tr><td·width="5%"·valign="top"·align="·✂ | 53 | » ··</pre><div·class="calloutlist"><table·border="0"·summary="Callout·list"><tr><td·width="5%"·valign="top"·align="left"><p><a·href="#list4-multixref"><img·src="images/callouts/1.png"·alt="1"·border="0"·/></a>·</p></td><td·valign="top"·align="left"><p>This·is·the·additional·<code·class="sgmltag-element">ptr</code>·element·which·is·mandatory·in·multiple·citations.·The·element·must·have·a·<code·class="sgmltag-attribute">type</code>·attribute·with·the·value·<code·class="sgmltag-attvalue">MULTIXREF</code>.·You·also·have·to·provide·an·unique·value·for·the·<code·class="sgmltag-attribute">target</code>·attribute.·This·specifies·the·ID·value·that·will·be·used·in·the·corresponding·element·in·the·RefDB-generated·bibliography.·The·ID·string·has·to·start·with·"IM".·In·contrast·to·DocBook·elements,·there·is·no·way·to·specify·where·a·link·should·point·to.·The·RefDB·XSL·stylesheets·will·use·the·first·bibliographic·entry·referenced·in·a·multiple·citation·as·the·link·target.</p></td></tr><tr><td·width="5%"·valign="top"·align="·✂ |
54 | </pre></div></div><div·class="sect3"·title="Generate·the·bibliography"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp609 | 54 | </pre></div></div><div·class="sect3"·title="Generate·the·bibliography"><div·class="titlepage"><div><div><h4·class="title"><a·id="idp60948280"></a>Generate·the·bibliography</h4></div></div></div><p>Unless·you·have·good·reasons·not·to·do·so,·you·should·use·the·<a·class="link"·href="re21.html"·title="runbib">runbib</a>·shell·script·to·generate·the·bibliography.·This·script·greatly·simplifies·this·task·and·offers·a·common·interface·for·all·supported·document·types.·The·following·subsection·will·explain·the·use·of·this·script.·If·you·like·to·do·it·the·hard·way·(or·if·you·want·to·peek·under·the·hood)·you'll·find·a·few·explanations·further·down·how·to·do·this.</p><div·class="sect4"·title="Use·runbib"><div·class="titlepage"><div><div><h5·class="title"><a·id="idp60949816"></a>Use·runbib</h5></div></div></div><p>Lets·assume·you·have·a·DocBook·SGML·document·<code·class="filename">mypaper.sgml</code>·and·want·to·submit·it·to·the·"Journal·of·Irreproducible·Results".·We·further·assume·that·the·bibliography·style·for·this·f·✂ |
55 | » ····<code·class="prompt">~$·</code> | 55 | » ····<code·class="prompt">~$·</code> |
56 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-S·"J.Irrep.Res."·-t·db31·foo.sgml</code></strong> | 56 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-S·"J.Irrep.Res."·-t·db31·foo.sgml</code></strong> |
57 | » ··</pre><p>For·a·similar·TEI·XML·document·<code·class="filename">bar.xml</code>·you·would·run:</p><pre·class="screen"> | 57 | » ··</pre><p>For·a·similar·TEI·XML·document·<code·class="filename">bar.xml</code>·you·would·run:</p><pre·class="screen"> |
58 | » ····<code·class="prompt">~$·</code> | 58 | » ····<code·class="prompt">~$·</code> |
59 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-S·"J.Irrep.Res."·-t·teix·bar.xml</code></strong> | 59 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-S·"J.Irrep.Res."·-t·teix·bar.xml</code></strong> |
60 | » ··</pre><p>In·both·cases·you·will·end·up·with·a·bibliography·file·(<code·class="filename">foo.bib.sgml</code>·and·<code·class="filename">bar.bib.xml</code>,·respectively)·as·well·as·with·a·stylesheet·(<code·class="filename">J.Irrep.Res.dsl</code>)·or·a·set·of·stylesheets·(<code·class="filename">J.Irrep.Res.fo.xsl</code>·and·<code·class="filename">J.Irrep.Res.html.xsl</code>),·respectively.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>Don't·worry·if·you·are·greeted·by·a·list·of·(Open)Jade·errors·complaining·about·missing·elements·when·you·first·run·this·script·on·a·particular·document.·Your·document·contains·a·number·of·crosslinks·that·point·to·elements·that·do·not·exist·yet·-·you·use·runbib·precisely·to·create·these·elements·(you·thus·face·a·classic·bootstrapping·problem).·As·soon·as·the·bibliography·is·created,·these·error·messages·should·go·away.·Later·you·will·only·get·an·error·message·for·each·bibliographic·entry·that·was·added·since·the·✂ | 60 | » ··</pre><p>In·both·cases·you·will·end·up·with·a·bibliography·file·(<code·class="filename">foo.bib.sgml</code>·and·<code·class="filename">bar.bib.xml</code>,·respectively)·as·well·as·with·a·stylesheet·(<code·class="filename">J.Irrep.Res.dsl</code>)·or·a·set·of·stylesheets·(<code·class="filename">J.Irrep.Res.fo.xsl</code>·and·<code·class="filename">J.Irrep.Res.html.xsl</code>),·respectively.</p><div·class="note"·title="Note"·style="margin-left:·0.5in;·margin-right:·0.5in;"><h3·class="title">Note</h3><p>Don't·worry·if·you·are·greeted·by·a·list·of·(Open)Jade·errors·complaining·about·missing·elements·when·you·first·run·this·script·on·a·particular·document.·Your·document·contains·a·number·of·crosslinks·that·point·to·elements·that·do·not·exist·yet·-·you·use·runbib·precisely·to·create·these·elements·(you·thus·face·a·classic·bootstrapping·problem).·As·soon·as·the·bibliography·is·created,·these·error·messages·should·go·away.·Later·you·will·only·get·an·error·message·for·each·bibliographic·entry·that·was·added·since·the·✂ |
61 | » ····<code·class="prompt">~$·</code> | 61 | » ····<code·class="prompt">~$·</code> |
62 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-r·-t·db50x·bar.xml</code></strong> | 62 | » ····<strong·class="userinput"><code>runbib·-d·mybib·-r·-t·db50x·bar.xml</code></strong> |
63 | » ··</pre><p>This·will·create·a·raw·bibliography·from·the·DocBook·5.0·document·<code·class="filename">bar.xml</code>,·using·the·reference·entries·in·the·database·<code·class="filename">mybib</code>.</p></div><div·class="sect4"·title="Do·it·the·hard·way"><div·class="titlepage"><div><div><h5·class="title"><a·id="idp609 | 63 | » ··</pre><p>This·will·create·a·raw·bibliography·from·the·DocBook·5.0·document·<code·class="filename">bar.xml</code>,·using·the·reference·entries·in·the·database·<code·class="filename">mybib</code>.</p></div><div·class="sect4"·title="Do·it·the·hard·way"><div·class="titlepage"><div><div><h5·class="title"><a·id="idp60964664"></a>Do·it·the·hard·way</h5></div></div></div><p>The·following·steps·do·exactly·what·the·runbib·script·does,·just·with·more·to·type.·The·only·benefit·of·the·hard·way·is·that·you·have·a·chance·to·fiddle·with·the·intermediate·XML·file·which·contains·the·list·of·bibliographic·entries·that·should·go·into·the·bibliography.·You·can·add·further·entries·to·extend·the·bibliography·if·you·want·to·include·uncited·publications.·The·following·procedure·was·written·with·a·DocBook·SGML·document·in·mind,·but·transferring·the·commands·to·XML·documents·is·straightforward.·However,·when·working·with·XML·documents·there·are·additional·steps·required·as·outlined·below.</p><div·class="procedure"><ol·class="procedu·✂ |
64 | » » <code·class="prompt">#~·</code> | 64 | » » <code·class="prompt">#~·</code> |
65 | » » <strong·class="userinput"><code>openjade·-t·sgml·-d·citations.dsl·/usr/lib/sgml/declaration/docbook-3.1.dcl·foo.sgml·>·foo.id.xml</code></strong> | 65 | » » <strong·class="userinput"><code>openjade·-t·sgml·-d·citations.dsl·/usr/lib/sgml/declaration/docbook-3.1.dcl·foo.sgml·>·foo.id.xml</code></strong> |
66 | » ······</pre><p>Be·prepared·for·a·long·list·of·"missing·ID"·error·messages.·This·is·due·to·the·fact·that·the·elements·with·the·IDs·that·the·<code·class="sgmltag-element">xref</code>·elements·in·the·citations·point·to·do·not·yet·exist,·they·will·be·generated·in·the·RefDB·bibliography·output.·If·you·process·documents·with·more·than·200·citations,·you'll·have·to·increase·the·maximum·error·limit·of·Jade·in·order·to·obtain·all·IDs·the·first·time.·After·the·first·complete·pass·(including·the·steps·outlined·below),·Jade·will·only·complain·about·any·additional·citations·that·you·have·inserted·since·the·last·run.</p><p>XML·files·are·processed·using·your·favourite·XSL·processor.·There·are·two·different·stylesheets·available·for·raw·and·for·cooked·bibliographies.·Both·work·all·the·same·for·DTD-based·(DocBook·4.x,·TEI·P4)·and·schema-based·(DocBook·5.x,·TEI·P5)·documents:</p><pre·class="screen"·width="60"> | 66 | » ······</pre><p>Be·prepared·for·a·long·list·of·"missing·ID"·error·messages.·This·is·due·to·the·fact·that·the·elements·with·the·IDs·that·the·<code·class="sgmltag-element">xref</code>·elements·in·the·citations·point·to·do·not·yet·exist,·they·will·be·generated·in·the·RefDB·bibliography·output.·If·you·process·documents·with·more·than·200·citations,·you'll·have·to·increase·the·maximum·error·limit·of·Jade·in·order·to·obtain·all·IDs·the·first·time.·After·the·first·complete·pass·(including·the·steps·outlined·below),·Jade·will·only·complain·about·any·additional·citations·that·you·have·inserted·since·the·last·run.</p><p>XML·files·are·processed·using·your·favourite·XSL·processor.·There·are·two·different·stylesheets·available·for·raw·and·for·cooked·bibliographies.·Both·work·all·the·same·for·DTD-based·(DocBook·4.x,·TEI·P4)·and·schema-based·(DocBook·5.x,·TEI·P5)·documents:</p><pre·class="screen"·width="60"> |
67 | » » <code·class="prompt">#~·</code> | 67 | » » <code·class="prompt">#~·</code> |
68 | » » <strong·class="userinput"><code>xsltproc·--catalogs·--xinclude·/usr/local/share/xsl/citations.xsl··foo.xml·>·foo.id.xml</code></strong> | 68 | » » <strong·class="userinput"><code>xsltproc·--catalogs·--xinclude·/usr/local/share/xsl/citations.xsl··foo.xml·>·foo.id.xml</code></strong> |
69 | » » <code·class="prompt">#~·</code> | 69 | » » <code·class="prompt">#~·</code> |
70 | » » <strong·class="userinput"><code>xsltproc·--catalogs·--xinclude·/usr/local/share/xsl/citationsraw.xsl··foo.xml·>·foo.id.xml</code></strong> | 70 | » » <strong·class="userinput"><code>xsltproc·--catalogs·--xinclude·/usr/local/share/xsl/citationsraw.xsl··foo.xml·>·foo.id.xml</code></strong> |
Offset 75, 15 lines modified | Offset 75, 15 lines modified | ||
75 | » » <strong·class="userinput"><code>xmllint·--noout·--nonet·--dtdvalid·file:///usr/local/share/refdb/dtd/citationlistx.dtd·foo.id.xml</code></strong> | 75 | » » <strong·class="userinput"><code>xmllint·--noout·--nonet·--dtdvalid·file:///usr/local/share/refdb/dtd/citationlistx.dtd·foo.id.xml</code></strong> |
76 | » ······</pre></li><li·class="step"·title="Create·the·bibliography·file"><p·class="title"><strong>Create·the·bibliography·file</strong></p><pre·class="screen"·width="60"> | 76 | » ······</pre></li><li·class="step"·title="Create·the·bibliography·file"><p·class="title"><strong>Create·the·bibliography·file</strong></p><pre·class="screen"·width="60"> |
77 | » » <code·class="prompt">~$·</code> | 77 | » » <code·class="prompt">~$·</code> |
78 | » » <strong·class="userinput"><code>refdbib·-d·mybib·-S·"J.Irrep.Res."·-t·db31·foo.id.xml·>·foo.bib.sgml</code></strong> | 78 | » » <strong·class="userinput"><code>refdbib·-d·mybib·-S·"J.Irrep.Res."·-t·db31·foo.id.xml·>·foo.bib.sgml</code></strong> |
79 | » ······</pre><p>This·assumes·that·your·reference·database·is·called·"mybib"·and·that·you·try·to·publish·your·paper·in·a·journal·that·accepts·the·style·with·the·name·"J.Irrep.Res.".</p><p>In·addition·to·the·bibliography·file,·refdbib·will·also·create·a·DSSSL·script·containing·the·style·specification.·This·file·is·a·customized·driver·file·for·the·RefDB-DocBook·driver·files·and·provides·a·couple·of·variable·values·specific·for·the·given·bibliography·style.</p><p>If·you·want·to·generate·a·raw·bibliography,·use·a·command·like·this:</p><pre·class="screen"·width="60"> | 79 | » ······</pre><p>This·assumes·that·your·reference·database·is·called·"mybib"·and·that·you·try·to·publish·your·paper·in·a·journal·that·accepts·the·style·with·the·name·"J.Irrep.Res.".</p><p>In·addition·to·the·bibliography·file,·refdbib·will·also·create·a·DSSSL·script·containing·the·style·specification.·This·file·is·a·customized·driver·file·for·the·RefDB-DocBook·driver·files·and·provides·a·couple·of·variable·values·specific·for·the·given·bibliography·style.</p><p>If·you·want·to·generate·a·raw·bibliography,·use·a·command·like·this:</p><pre·class="screen"·width="60"> |
80 | » » <code·class="prompt">~$·</code> | 80 | » » <code·class="prompt">~$·</code> |
81 | » » <strong·class="userinput"><code>refdbib·-d·mybib·-r·-t·db50x·foo.id.xml·>·foo.bib.xml</code></strong> | 81 | » » <strong·class="userinput"><code>refdbib·-d·mybib·-r·-t·db50x·foo.id.xml·>·foo.bib.xml</code></strong> |
82 | » ······</pre></li><li·class="step"·title="Post-processing"><p·class="title"><strong>Post-processing</strong></p><p>This·step·is·only·required·for·XML·documents.·First·we·have·to·bring·the·stylesheets·into·shape,·and·if·it·is·a·TEI·document,·we'll·also·have·to·transform·the·bibliography·file·itself.</p><p>refdbib·creates·a·general-purpose·XSL·stylesheet·which·we·need·to·turn·into·one·FO·and·one·HTML·stylesheet.·Create·two·copies·of·the·file.·If·the·stylesheet·was·e.g.·<code·class="filename">J.Biol.Chem.xsl</code>,·you·need·one·copy·named·<code·class="filename">J.Biol.Chem.fo.xsl</code>·and·one·copy·named·<code·class="filename">J.Biol.Chem.html.xsl</code>.·Scan·the·files·for·an·import·statement·whose·<code·class="sgmltag-attribute">href</code>·attribute·is·surrounded·with·two·"<!--·REFDBSTYLESHEET·-->"·comments.·The·value·of·this·attribute·must·be·set·to·the·full·path·of·the·corresponding·original·stylesheet·(DocBook·FO·or·HTML,·or·TEI·FO·or·HTML).</p><p>If·you're·working·on·a·TEI·P4·XML·document,·you'll··✂ | 82 | » ······</pre></li><li·class="step"·title="Post-processing"><p·class="title"><strong>Post-processing</strong></p><p>This·step·is·only·required·for·XML·documents.·First·we·have·to·bring·the·stylesheets·into·shape,·and·if·it·is·a·TEI·document,·we'll·also·have·to·transform·the·bibliography·file·itself.</p><p>refdbib·creates·a·general-purpose·XSL·stylesheet·which·we·need·to·turn·into·one·FO·and·one·HTML·stylesheet.·Create·two·copies·of·the·file.·If·the·stylesheet·was·e.g.·<code·class="filename">J.Biol.Chem.xsl</code>,·you·need·one·copy·named·<code·class="filename">J.Biol.Chem.fo.xsl</code>·and·one·copy·named·<code·class="filename">J.Biol.Chem.html.xsl</code>.·Scan·the·files·for·an·import·statement·whose·<code·class="sgmltag-attribute">href</code>·attribute·is·surrounded·with·two·"<!--·REFDBSTYLESHEET·-->"·comments.·The·value·of·this·attribute·must·be·set·to·the·full·path·of·the·corresponding·original·stylesheet·(DocBook·FO·or·HTML,·or·TEI·FO·or·HTML).</p><p>If·you're·working·on·a·TEI·P4·XML·document,·you'll··✂ |
83 | » ··<code·class="prompt">~$·</code> | 83 | » ··<code·class="prompt">~$·</code> |
84 | » ··<strong·class="userinput"><code>refdbjade·-t·html·-s·J.Irrep.Res.dsl·foo.sgml</code></strong> | 84 | » ··<strong·class="userinput"><code>refdbjade·-t·html·-s·J.Irrep.Res.dsl·foo.sgml</code></strong> |
85 | » </pre><pre·class="screen"·width="60"> | 85 | » </pre><pre·class="screen"·width="60"> |
86 | » ··<code·class="prompt">~$·</code> | 86 | » ··<code·class="prompt">~$·</code> |
87 | » ··<strong·class="userinput"><code>refdbxml·-t·pdf·-s·J.Irrep.Res.fo.xsl·bar.xml</code></strong> | 87 | » ··<strong·class="userinput"><code>refdbxml·-t·pdf·-s·J.Irrep.Res.fo.xsl·bar.xml</code></strong> |
88 | » </pre><p>If·you·want·to·change·the·bibliography·style·of·your·document,·all·you·need·to·do·is·to·rerun·<span·class="command"><strong>runbib</strong></span>·and·<span·class="command"><strong>refdbjade</strong></span>·or·<span·class="command"><strong>refdbxml</strong></span>·with·the·new·parameters.·No·changes·to·your·DocBook·source·are·necessary.</p><p>Processing·your·document·with·a·raw·bibliography·does·not·differ·from·processing·any·other·DocBook·or·TEI·document.·However,·you·can·still·use·the·<a·class="link"·href="re23.html"·title="refdbxml">refdbxml</a>·script·to·avoid·having·to·type·the·full·command·line·of·your·XSL·processor.·Use·something·like·this·to·process·a·Docbook·5.0·document·with·a·raw·bibliography:</p><pre·class="screen"·width="60"> | 88 | » </pre><p>If·you·want·to·change·the·bibliography·style·of·your·document,·all·you·need·to·do·is·to·rerun·<span·class="command"><strong>runbib</strong></span>·and·<span·class="command"><strong>refdbjade</strong></span>·or·<span·class="command"><strong>refdbxml</strong></span>·with·the·new·parameters.·No·changes·to·your·DocBook·source·are·necessary.</p><p>Processing·your·document·with·a·raw·bibliography·does·not·differ·from·processing·any·other·DocBook·or·TEI·document.·However,·you·can·still·use·the·<a·class="link"·href="re23.html"·title="refdbxml">refdbxml</a>·script·to·avoid·having·to·type·the·full·command·line·of·your·XSL·processor.·Use·something·like·this·to·process·a·Docbook·5.0·document·with·a·raw·bibliography:</p><pre·class="screen"·width="60"> |
89 | » ··<code·class="prompt">~$·</code> | 89 | » ··<code·class="prompt">~$·</code> |
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3 | http://myserver.com/cgi-bin/refdbsru/foo?<query> | 3 | http://myserver.com/cgi-bin/refdbsru/foo?<query> |
4 | » </pre><p>The·first·URL·will·use·the·default·database.·The·second·URL·will·use·the·database·"foo"·instead.·The·database·name·goes·between·the·slash·that·follows·the·CGI·script·name·and·the·question·mark·that·opens·the·query·string.</p></div></div><div·class="sect2"·title="The·scan·operation"><div·class="titlepage"><div><div><h3·class="title"><a·id="sect-sru-scan"></a>The·scan·operation</h3></div></div></div><p>The·purpose·of·the·scan·operation·is·to·provide·a·matching·list·of·query·terms,·along·with·the·number·of·references·each·term·would·retrieve.·This·is·similar·to·browsing·through·a·stack·of·library·cards·with·subjects·or·author·names·on·them.·The·RefDB·SRU·service·allows·to·scan·the·following·database·fields:</p><div·class="itemizedlist"><ul·class="itemizedlist"·type="disc"><li·class="listitem"><p>keywords·(bib.subject)</p><p>http://mybox.com/cgi-bin/refdbsru/?operation=scan&version=1.1&scanClause=bib.subject%3d%22dichroism%22</p></li><li·class="listitem"><p>author·names·(bib.name)</p><p>http://m·✂ | 4 | » </pre><p>The·first·URL·will·use·the·default·database.·The·second·URL·will·use·the·database·"foo"·instead.·The·database·name·goes·between·the·slash·that·follows·the·CGI·script·name·and·the·question·mark·that·opens·the·query·string.</p></div></div><div·class="sect2"·title="The·scan·operation"><div·class="titlepage"><div><div><h3·class="title"><a·id="sect-sru-scan"></a>The·scan·operation</h3></div></div></div><p>The·purpose·of·the·scan·operation·is·to·provide·a·matching·list·of·query·terms,·along·with·the·number·of·references·each·term·would·retrieve.·This·is·similar·to·browsing·through·a·stack·of·library·cards·with·subjects·or·author·names·on·them.·The·RefDB·SRU·service·allows·to·scan·the·following·database·fields:</p><div·class="itemizedlist"><ul·class="itemizedlist"·type="disc"><li·class="listitem"><p>keywords·(bib.subject)</p><p>http://mybox.com/cgi-bin/refdbsru/?operation=scan&version=1.1&scanClause=bib.subject%3d%22dichroism%22</p></li><li·class="listitem"><p>author·names·(bib.name)</p><p>http://m·✂ |
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