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| 1 | {"name":"protomol","origin":"biology/protomol","version":"2.0.3_12","comment":"OO,·component·based,·framework·for·molecular·dynamics·(MD)·simulations","maintainer":"ports@FreeBSD.org","www":"http://protomol.sourceforge.net/","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":12758118,"licenselogic":"single","licenses":["GPLv2"],"desc":"ProtoMol·is·an·object-oriented,·component·based,·framework·for·molecular\ndynamics·(MD)·simulations.·The·framework·supports·the·CHARMM·19·and·28a2·force\nfields·and·is·able·to·process·PDB,·PSF,·XYZ·and·DCD·trajectory·files.·It·is\ndesigned·for·high·flexibility,·easy·extendibility·and·maintenance,·and·high\nperformance·demands,·including·parallelization.·The·technique·of·multiple\ntime-stepping·is·used·to·improve·long-term·efficiency.·The·use·of·fast\nelectrostatic·force·evaluation·algorithms·like·Ewald,·particle·Mesh·Ewald·(PME),\nand·Multigrid·(MG)·summation·further·enhances·performance.·Longer·time·steps\nare·possible·using·MOLLY,·Langevin·Mo·✂ | 1 | {"name":"protomol","origin":"biology/protomol","version":"2.0.3_12","comment":"OO,·component·based,·framework·for·molecular·dynamics·(MD)·simulations","maintainer":"ports@FreeBSD.org","www":"http://protomol.sourceforge.net/","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":12758118,"licenselogic":"single","licenses":["GPLv2"],"desc":"ProtoMol·is·an·object-oriented,·component·based,·framework·for·molecular\ndynamics·(MD)·simulations.·The·framework·supports·the·CHARMM·19·and·28a2·force\nfields·and·is·able·to·process·PDB,·PSF,·XYZ·and·DCD·trajectory·files.·It·is\ndesigned·for·high·flexibility,·easy·extendibility·and·maintenance,·and·high\nperformance·demands,·including·parallelization.·The·technique·of·multiple\ntime-stepping·is·used·to·improve·long-term·efficiency.·The·use·of·fast\nelectrostatic·force·evaluation·algorithms·like·Ewald,·particle·Mesh·Ewald·(PME),\nand·Multigrid·(MG)·summation·further·enhances·performance.·Longer·time·steps\nare·possible·using·MOLLY,·Langevin·Mo·✂ |
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| 40 | ··0x004969c0·20536f66·74772e2c·20333028·33293a32··Softw.,·30(3):2 | 40 | ··0x004969c0·20536f66·74772e2c·20333028·33293a32··Softw.,·30(3):2 |
| 41 | ··0x004969d0·3337ad32·36352c20·32303034·2e005072·37.265,·2004..Pr | 41 | ··0x004969d0·3337ad32·36352c20·32303034·2e005072·37.265,·2004..Pr |
| 42 | ··0x004969e0·6f746f4d·6f6c2056·65727369·6f6e2000·otoMol·Version·. | 42 | ··0x004969e0·6f746f4d·6f6c2056·65727369·6f6e2000·otoMol·Version·. |
| 43 | ··0x004969f0·322e302e·3300726f·6f740041·70722032·2.0.3.root.Apr·2 | 43 | ··0x004969f0·322e302e·3300726f·6f740041·70722032·2.0.3.root.Apr·2 |
| 44 | ··0x00496a00·31203230·31360031·393a3438·3a323000·1·2016.19:48:20. | 44 | ··0x00496a00·31203230·31360031·393a3438·3a323000·1·2016.19:48:20. |
| 45 | ··0x00496a10·46726565·42534420·72333030·3136352d·FreeBSD·r300165- | 45 | ··0x00496a10·46726565·42534420·72333030·3136352d·FreeBSD·r300165- |
| 46 | ··0x00496a20·63757272·656e742d·6d617374·65722d6a·current-master-j | 46 | ··0x00496a20·63757272·656e742d·6d617374·65722d6a·current-master-j |
| 47 | ··0x00496a30·6f622d3 | 47 | ··0x00496a30·6f622d31·37203131·2e302d43·55525245·ob-17·11.0-CURRE |
| 48 | ··0x00496a40·4e542046·72656542·53442031·312e302d·NT·FreeBSD·11.0- | 48 | ··0x00496a40·4e542046·72656542·53442031·312e302d·NT·FreeBSD·11.0- |
| 49 | ··0x00496a50·43555252·454e5420·616d6436·3400632b·CURRENT·amd64.c+ | 49 | ··0x00496a50·43555252·454e5420·616d6436·3400632b·CURRENT·amd64.c+ |
| 50 | ··0x00496a60·2b202d4f·32202d70·69706520·2d667374·+·-O2·-pipe·-fst | 50 | ··0x00496a60·2b202d4f·32202d70·69706520·2d667374·+·-O2·-pipe·-fst |
| 51 | ··0x00496a70·61636b2d·70726f74·6563746f·72202d66·ack-protector·-f | 51 | ··0x00496a70·61636b2d·70726f74·6563746f·72202d66·ack-protector·-f |
| 52 | ··0x00496a80·6e6f2d73·74726963·742d616c·69617369·no-strict-aliasi | 52 | ··0x00496a80·6e6f2d73·74726963·742d616c·69617369·no-strict-aliasi |
| 53 | ··0x00496a90·6e672020·2d4c2f75·73722f6c·6f63616c·ng··-L/usr/local | 53 | ··0x00496a90·6e672020·2d4c2f75·73722f6c·6f63616c·ng··-L/usr/local |
| 54 | ··0x00496aa0·2f6c6962·002d6269·7400496e·666f726d·/lib.-bit.Inform | 54 | ··0x00496aa0·2f6c6962·002d6269·7400496e·666f726d·/lib.-bit.Inform |
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| 58 | ··0x0057ff90·6174682e·20536f66·74772e2c·20333028·ath.·Softw.,·30( | 58 | ··0x0057ff90·6174682e·20536f66·74772e2c·20333028·ath.·Softw.,·30( |
| 59 | ··0x0057ffa0·33293a32·3337ad32·36352c20·32303034·3):237.265,·2004 | 59 | ··0x0057ffa0·33293a32·3337ad32·36352c20·32303034·3):237.265,·2004 |
| 60 | ··0x0057ffb0·2e005072·6f746f4d·6f6c2056·65727369·..ProtoMol·Versi | 60 | ··0x0057ffb0·2e005072·6f746f4d·6f6c2056·65727369·..ProtoMol·Versi |
| 61 | ··0x0057ffc0·6f6e2000·322e302e·3300726f·6f740041·on·.2.0.3.root.A | 61 | ··0x0057ffc0·6f6e2000·322e302e·3300726f·6f740041·on·.2.0.3.root.A |
| 62 | ··0x0057ffd0·70722032·31203230·31360031·393a3438·pr·21·2016.19:48 | 62 | ··0x0057ffd0·70722032·31203230·31360031·393a3438·pr·21·2016.19:48 |
| 63 | ··0x0057ffe0·3a323000·46726565·42534420·72333030·:20.FreeBSD·r300 | 63 | ··0x0057ffe0·3a323000·46726565·42534420·72333030·:20.FreeBSD·r300 |
| 64 | ··0x0057fff0·3136352d·63757272·656e742d·6d617374·165-current-mast | 64 | ··0x0057fff0·3136352d·63757272·656e742d·6d617374·165-current-mast |
| 65 | ··0x00580000·65722d6a·6f622d3 | 65 | ··0x00580000·65722d6a·6f622d31·37203131·2e302d43·er-job-17·11.0-C |
| 66 | ··0x00580010·55525245·4e542046·72656542·53442031·URRENT·FreeBSD·1 | 66 | ··0x00580010·55525245·4e542046·72656542·53442031·URRENT·FreeBSD·1 |
| 67 | ··0x00580020·312e302d·43555252·454e5420·616d6436·1.0-CURRENT·amd6 | 67 | ··0x00580020·312e302d·43555252·454e5420·616d6436·1.0-CURRENT·amd6 |
| 68 | ··0x00580030·3400632b·2b202d4f·32202d70·69706520·4.c++·-O2·-pipe· | 68 | ··0x00580030·3400632b·2b202d4f·32202d70·69706520·4.c++·-O2·-pipe· |
| 69 | ··0x00580040·2d667374·61636b2d·70726f74·6563746f·-fstack-protecto | 69 | ··0x00580040·2d667374·61636b2d·70726f74·6563746f·-fstack-protecto |
| 70 | ··0x00580050·72202d66·6e6f2d73·74726963·742d616c·r·-fno-strict-al | 70 | ··0x00580050·72202d66·6e6f2d73·74726963·742d616c·r·-fno-strict-al |
| 71 | ··0x00580060·69617369·6e672020·2d4c2f75·73722f6c·iasing··-L/usr/l | 71 | ··0x00580060·69617369·6e672020·2d4c2f75·73722f6c·iasing··-L/usr/l |
| 72 | ··0x00580070·6f63616c·2f6c6962·002d6269·7400496e·ocal/lib.-bit.In | 72 | ··0x00580070·6f63616c·2f6c6962·002d6269·7400496e·ocal/lib.-bit.In |
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| 45 | ··0x00653520·682e2053·6f667477·2e2c2033·30283329·h.·Softw.,·30(3) | 45 | ··0x00653520·682e2053·6f667477·2e2c2033·30283329·h.·Softw.,·30(3) |
| 46 | ··0x00653530·3a323337·ad323635·2c203230·30342e00·:237.265,·2004.. | 46 | ··0x00653530·3a323337·ad323635·2c203230·30342e00·:237.265,·2004.. |
| 47 | ··0x00653540·50726f74·6f4d6f6c·20566572·73696f6e·ProtoMol·Version | 47 | ··0x00653540·50726f74·6f4d6f6c·20566572·73696f6e·ProtoMol·Version |
| 48 | ··0x00653550·2000322e·302e3300·726f6f74·00417072··.2.0.3.root.Apr | 48 | ··0x00653550·2000322e·302e3300·726f6f74·00417072··.2.0.3.root.Apr |
| 49 | ··0x00653560·20323120·32303136·0031393a·34383a32··21·2016.19:48:2 | 49 | ··0x00653560·20323120·32303136·0031393a·34383a32··21·2016.19:48:2 |
| 50 | ··0x00653570·30004672·65654253·44207233·30303136·0.FreeBSD·r30016 | 50 | ··0x00653570·30004672·65654253·44207233·30303136·0.FreeBSD·r30016 |
| 51 | ··0x00653580·352d6375·7272656e·742d6d61·73746572·5-current-master | 51 | ··0x00653580·352d6375·7272656e·742d6d61·73746572·5-current-master |
| 52 | ··0x00653590·2d6a6f62·2d3 | 52 | ··0x00653590·2d6a6f62·2d313720·31312e30·2d435552·-job-17·11.0-CUR |
| 53 | ··0x006535a0·52454e54·20467265·65425344·2031312e·RENT·FreeBSD·11. | 53 | ··0x006535a0·52454e54·20467265·65425344·2031312e·RENT·FreeBSD·11. |
| 54 | ··0x006535b0·302d4355·5252454e·5420616d·64363400·0-CURRENT·amd64. | 54 | ··0x006535b0·302d4355·5252454e·5420616d·64363400·0-CURRENT·amd64. |
| 55 | ··0x006535c0·632b2b20·2d4f3220·2d706970·65202d66·c++·-O2·-pipe·-f | 55 | ··0x006535c0·632b2b20·2d4f3220·2d706970·65202d66·c++·-O2·-pipe·-f |
| 56 | ··0x006535d0·73746163·6b2d7072·6f746563·746f7220·stack-protector· | 56 | ··0x006535d0·73746163·6b2d7072·6f746563·746f7220·stack-protector· |
| 57 | ··0x006535e0·2d666e6f·2d737472·6963742d·616c6961·-fno-strict-alia | 57 | ··0x006535e0·2d666e6f·2d737472·6963742d·616c6961·-fno-strict-alia |
| 58 | ··0x006535f0·73696e67·20202d4c·2f757372·2f6c6f63·sing··-L/usr/loc | 58 | ··0x006535f0·73696e67·20202d4c·2f757372·2f6c6f63·sing··-L/usr/loc |
| 59 | ··0x00653600·616c2f6c·6962002d·62697400·496e666f·al/lib.-bit.Info | 59 | ··0x00653600·616c2f6c·6962002d·62697400·496e666f·al/lib.-bit.Info |