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| 1 | {"name":"p5-bioperl-run","origin":"biology/p5-bioperl-run","version":"1.6.901_1","comment":"Wrapper·modules·for·common·bioinformatics·tools","maintainer":"perl@FreeBSD.org","www":"https://github.com/bioperl/bioperl-run","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":23589 | 1 | {"name":"p5-bioperl-run","origin":"biology/p5-bioperl-run","version":"1.6.901_1","comment":"Wrapper·modules·for·common·bioinformatics·tools","maintainer":"perl@FreeBSD.org","www":"https://github.com/bioperl/bioperl-run","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":2358918,"licenselogic":"or","licenses":["GPLv3","ART10"],"desc":"Bioperl-run·contain·modules·that·provides·a·PERL·interface·to·various\nbioinformatics·applications.·This·allows·various·applications·to·be·used\nwith·common·Bioperl·objects.\n\nWWW:·https://github.com/bioperl/bioperl-run","deps":{"p5-bioperl":{"origin":"biology/p5-bioperl","version":"1.6.924_4"},"p5-IPC-Run":{"origin":"devel/p5-IPC-Run","version":"0.94"},"perl5":{"origin":"lang/perl5.20","version":"5.20.3_13"},"p5-File-Sort":{"origin":"misc/p5-File-Sort","version":"1.01_1"},"p5-Config-Any":{"origin":"devel/p5-Config-Any","version":"0.27"},"p5-Algorithm-Diff":{"origin":"devel/p5-Algorithm-Diff","version":"1.1903"},"p5-XML-Twig":{"origin":"textproc·✂ |
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| 1 | {"name":"p5-bioperl-run","origin":"biology/p5-bioperl-run","version":"1.6.901_1","comment":"Wrapper·modules·for·common·bioinformatics·tools","maintainer":"perl@FreeBSD.org","www":"https://github.com/bioperl/bioperl-run","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":23589 | 1 | {"name":"p5-bioperl-run","origin":"biology/p5-bioperl-run","version":"1.6.901_1","comment":"Wrapper·modules·for·common·bioinformatics·tools","maintainer":"perl@FreeBSD.org","www":"https://github.com/bioperl/bioperl-run","abi":"FreeBSD:11:amd64","arch":"freebsd:11:x86:64","prefix":"/usr/local","flatsize":2358918,"licenselogic":"or","licenses":["GPLv3","ART10"],"desc":"Bioperl-run·contain·modules·that·provides·a·PERL·interface·to·various\nbioinformatics·applications.·This·allows·various·applications·to·be·used\nwith·common·Bioperl·objects.\n\nWWW:·https://github.com/bioperl/bioperl-run","deps":{"p5-bioperl":{"origin":"biology/p5-bioperl","version":"1.6.924_4"},"p5-IPC-Run":{"origin":"devel/p5-IPC-Run","version":"0.94"},"perl5":{"origin":"lang/perl5.20","version":"5.20.3_13"},"p5-File-Sort":{"origin":"misc/p5-File-Sort","version":"1.01_1"},"p5-Config-Any":{"origin":"devel/p5-Config-Any","version":"0.27"},"p5-Algorithm-Diff":{"origin":"devel/p5-Algorithm-Diff","version":"1.1903"},"p5-XML-Twig":{"origin":"textproc·✂ |
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| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::ESoap·3" | 135 | .IX·Title·"Bio::DB::ESoap·3" |
| 136 | .TH·Bio::DB::ESoap·3·"2016-06-1 | 136 | .TH·Bio::DB::ESoap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::ESoap·\-·Client·for·the·NCBI·Entrez·EUtilities·SOAP·server | 142 | Bio::DB::ESoap·\-·Client·for·the·NCBI·Entrez·EUtilities·SOAP·server |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
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| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::ESoap::WSDL·3" | 135 | .IX·Title·"Bio::DB::ESoap::WSDL·3" |
| 136 | .TH·Bio::DB::ESoap::WSDL·3·"2016-06-1 | 136 | .TH·Bio::DB::ESoap::WSDL·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::ESoap::WSDL·\-·WSDL·parsing·for·Entrez·SOAP·EUtilities | 142 | Bio::DB::ESoap::WSDL·\-·WSDL·parsing·for·Entrez·SOAP·EUtilities |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities·3" |
| 136 | .TH·Bio::DB::SoapEUtilities·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities·\-·Interface·to·the·NCBI·Entrez·web·service·*BETA* | 142 | Bio::DB::SoapEUtilities·\-·Interface·to·the·NCBI·Entrez·web·service·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::DocSumAdaptor·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::DocSumAdaptor·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::DocSumAdaptor·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::DocSumAdaptor·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::DocSumAdaptor·\-·Handle·for·Entrez·SOAP·DocSums | 142 | Bio::DB::SoapEUtilities::DocSumAdaptor·\-·Handle·for·Entrez·SOAP·DocSums |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::FetchAdaptor·\-·Conversion·of·Entrez·SOAP·messages·to·BioPerl·objects | 142 | Bio::DB::SoapEUtilities::FetchAdaptor·\-·Conversion·of·Entrez·SOAP·messages·to·BioPerl·objects |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor::seq·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor::seq·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor::seq·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor::seq·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::FetchAdaptor::seq·\-·Fetch·adaptor·for·'seq' | 142 | Bio::DB::SoapEUtilities::FetchAdaptor::seq·\-·Fetch·adaptor·for·'seq' |
| 143 | efetch·SOAP·messages | 143 | efetch·SOAP·messages |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor::species·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::FetchAdaptor::species·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor::species·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::FetchAdaptor::species·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::FetchAdaptor::species·\-·Fetch·adaptor·for | 142 | Bio::DB::SoapEUtilities::FetchAdaptor::species·\-·Fetch·adaptor·for |
| 143 | \&'taxonomy'·efetch·SOAP·messages | 143 | \&'taxonomy'·efetch·SOAP·messages |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::GQueryAdaptor·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::GQueryAdaptor·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::GQueryAdaptor·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::GQueryAdaptor·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::GQueryAdaptor·\-·Handle·for·Entrez·SOAP·GlobalQuery·items | 142 | Bio::DB::SoapEUtilities::GQueryAdaptor·\-·Handle·for·Entrez·SOAP·GlobalQuery·items |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::LinkAdaptor·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::LinkAdaptor·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::LinkAdaptor·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::LinkAdaptor·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::LinkAdaptor·\-·Handle·for·Entrez·SOAP·LinkSets | 142 | Bio::DB::SoapEUtilities::LinkAdaptor·\-·Handle·for·Entrez·SOAP·LinkSets |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::DB::SoapEUtilities::Result·3" | 135 | .IX·Title·"Bio::DB::SoapEUtilities::Result·3" |
| 136 | .TH·Bio::DB::SoapEUtilities::Result·3·"2016-06-1 | 136 | .TH·Bio::DB::SoapEUtilities::Result·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::DB::SoapEUtilities::Result·\-·Accessor·object·for·SoapEUtilities·results | 142 | Bio::DB::SoapEUtilities::Result·\-·Accessor·object·for·SoapEUtilities·results |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Factory::EMBOSS·3" | 135 | .IX·Title·"Bio::Factory::EMBOSS·3" |
| 136 | .TH·Bio::Factory::EMBOSS·3·"2016-06-1 | 136 | .TH·Bio::Factory::EMBOSS·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Factory::EMBOSS·\-·EMBOSS·application·factory·class | 142 | Bio::Factory::EMBOSS·\-·EMBOSS·application·factory·class |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::Clustalw·3" | 135 | .IX·Title·"Bio::Installer::Clustalw·3" |
| 136 | .TH·Bio::Installer::Clustalw·3·"2016-06-1 | 136 | .TH·Bio::Installer::Clustalw·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::Clustalw·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::Clustalw·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::EMBOSS·3" | 135 | .IX·Title·"Bio::Installer::EMBOSS·3" |
| 136 | .TH·Bio::Installer::EMBOSS·3·"2016-06-1 | 136 | .TH·Bio::Installer::EMBOSS·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::EMBOSS·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::EMBOSS·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::Generic·3" | 135 | .IX·Title·"Bio::Installer::Generic·3" |
| 136 | .TH·Bio::Installer::Generic·3·"2016-06-1 | 136 | .TH·Bio::Installer::Generic·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::Generic·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::Generic·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::Hyphy·3" | 135 | .IX·Title·"Bio::Installer::Hyphy·3" |
| 136 | .TH·Bio::Installer::Hyphy·3·"2016-06-1 | 136 | .TH·Bio::Installer::Hyphy·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::Hyphy·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::Hyphy·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::Muscle·3" | 135 | .IX·Title·"Bio::Installer::Muscle·3" |
| 136 | .TH·Bio::Installer::Muscle·3·"2016-06-1 | 136 | .TH·Bio::Installer::Muscle·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::Muscle·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::Muscle·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::PAML·3" | 135 | .IX·Title·"Bio::Installer::PAML·3" |
| 136 | .TH·Bio::Installer::PAML·3·"2016-06-1 | 136 | .TH·Bio::Installer::PAML·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::PAML·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::PAML·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::Probcons·3" | 135 | .IX·Title·"Bio::Installer::Probcons·3" |
| 136 | .TH·Bio::Installer::Probcons·3·"2016-06-1 | 136 | .TH·Bio::Installer::Probcons·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::Probcons·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::Probcons·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::SLR·3" | 135 | .IX·Title·"Bio::Installer::SLR·3" |
| 136 | .TH·Bio::Installer::SLR·3·"2016-06-1 | 136 | .TH·Bio::Installer::SLR·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::SLR·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::SLR·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Installer::TCoffee·3" | 135 | .IX·Title·"Bio::Installer::TCoffee·3" |
| 136 | .TH·Bio::Installer::TCoffee·3·"2016-06-1 | 136 | .TH·Bio::Installer::TCoffee·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Installer::TCoffee·\-·DESCRIPTION·of·Object | 142 | Bio::Installer::TCoffee·\-·DESCRIPTION·of·Object |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Amap·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Amap·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Amap·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Amap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Amap·\-·Object·for·the·calculation·of·an | 142 | Bio::Tools::Run::Alignment::Amap·\-·Object·for·the·calculation·of·an |
| 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned | 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Blat·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Blat·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Blat·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Blat·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Blat | 142 | Bio::Tools::Run::Alignment::Blat |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Clustalw·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Clustalw·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Clustalw·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Clustalw·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Clustalw·\-·Object·for·the·calculation·of·a | 142 | Bio::Tools::Run::Alignment::Clustalw·\-·Object·for·the·calculation·of·a |
| 143 | multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or | 143 | multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::DBA·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::DBA·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::DBA·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::DBA·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::DBA·\-·Object·for·the·alignment·of·two | 142 | Bio::Tools::Run::Alignment::DBA·\-·Object·for·the·alignment·of·two |
| 143 | sequences·using·the·DNA·Block·Aligner·program. | 143 | sequences·using·the·DNA·Block·Aligner·program. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Exonerate·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Exonerate·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Exonerate·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Exonerate·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Exonerate | 142 | Bio::Tools::Run::Alignment::Exonerate |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Gmap·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Gmap·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Gmap·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Gmap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Gmap·\-·Wrapper·for·running·gmap. | 142 | Bio::Tools::Run::Alignment::Gmap·\-·Wrapper·for·running·gmap. |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Kalign·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Kalign·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Kalign·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Kalign·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Kalign·\-·Object·for·the·calculation·of·an | 142 | Bio::Tools::Run::Alignment::Kalign·\-·Object·for·the·calculation·of·an |
| 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned | 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Lagan·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Lagan·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Lagan·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Lagan·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Lagan·\-·Object·for·the·local·execution·of·the·LAGAN·suite·of·tools·(including·MLAGAN·for·multiple·sequence·alignments) | 142 | Bio::Tools::Run::Alignment::Lagan·\-·Object·for·the·local·execution·of·the·LAGAN·suite·of·tools·(including·MLAGAN·for·multiple·sequence·alignments) |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::MAFFT·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::MAFFT·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::MAFFT·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::MAFFT·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::MAFFT·\-·run·the·MAFFT·alignment·tools | 142 | Bio::Tools::Run::Alignment::MAFFT·\-·run·the·MAFFT·alignment·tools |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::MSAProbs·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::MSAProbs·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::MSAProbs·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::MSAProbs·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::MSAProbs·\-·Object·for·the·calculation·of·a | 142 | Bio::Tools::Run::Alignment::MSAProbs·\-·Object·for·the·calculation·of·a |
| 143 | multiple·sequence·alignment·(MSA)·from·a·set·of·unaligned·sequences·using· | 143 | multiple·sequence·alignment·(MSA)·from·a·set·of·unaligned·sequences·using· |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Muscle·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Muscle·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Muscle·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Muscle·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Muscle·\-·Object·for·the·calculation·of·an | 142 | Bio::Tools::Run::Alignment::Muscle·\-·Object·for·the·calculation·of·an |
| 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned | 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Pal2Nal·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Pal2Nal·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Pal2Nal·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Pal2Nal·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Pal2Nal·\-·Wrapper·for·Pal2Nal | 142 | Bio::Tools::Run::Alignment::Pal2Nal·\-·Wrapper·for·Pal2Nal |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Probalign·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Probalign·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Probalign·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Probalign·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Probalign·\-·Object·for·the·calculation·of | 142 | Bio::Tools::Run::Alignment::Probalign·\-·Object·for·the·calculation·of |
| 143 | a·multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or | 143 | a·multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Probcons·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Probcons·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Probcons·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Probcons·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Probcons·\-·Object·for·the·calculation·of·an | 142 | Bio::Tools::Run::Alignment::Probcons·\-·Object·for·the·calculation·of·an |
| 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned | 143 | iterative·multiple·sequence·alignment·from·a·set·of·unaligned |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Proda·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Proda·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Proda·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Proda·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Proda·\-·Object·for·the·calculation·of·sets | 142 | Bio::Tools::Run::Alignment::Proda·\-·Object·for·the·calculation·of·sets |
| 143 | of·multiple·sequence·alignments·from·a·set·of·unaligned·sequences·or | 143 | of·multiple·sequence·alignments·from·a·set·of·unaligned·sequences·or |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::Sim4·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::Sim4·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::Sim4·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::Sim4·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::Sim4·\-·Wrapper·for·Sim4·program·that·allows | 142 | Bio::Tools::Run::Alignment::Sim4·\-·Wrapper·for·Sim4·program·that·allows |
| 143 | for·alignment·of·cdna·to·genomic·sequences | 143 | for·alignment·of·cdna·to·genomic·sequences |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::StandAloneFasta·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::StandAloneFasta·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::StandAloneFasta·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::StandAloneFasta·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::StandAloneFasta·\-·Object·for·the·local | 142 | Bio::Tools::Run::Alignment::StandAloneFasta·\-·Object·for·the·local |
| 143 | execution·of·the·Fasta3·programs·((t)fasta3,·(t)fastx3,·(t)fasty3 | 143 | execution·of·the·Fasta3·programs·((t)fasta3,·(t)fastx3,·(t)fasty3 |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Alignment::TCoffee·3" | 135 | .IX·Title·"Bio::Tools::Run::Alignment::TCoffee·3" |
| 136 | .TH·Bio::Tools::Run::Alignment::TCoffee·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Alignment::TCoffee·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Alignment::TCoffee·\-·Object·for·the·calculation·of·a | 142 | Bio::Tools::Run::Alignment::TCoffee·\-·Object·for·the·calculation·of·a |
| 143 | multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or | 143 | multiple·sequence·alignment·from·a·set·of·unaligned·sequences·or |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Analysis·3" | 135 | .IX·Title·"Bio::Tools::Run::Analysis·3" |
| 136 | .TH·Bio::Tools::Run::Analysis·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Analysis·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Analysis·\-·Module·representing·any·(remote·or·local) | 142 | Bio::Tools::Run::Analysis·\-·Module·representing·any·(remote·or·local) |
| 143 | analysis·tool | 143 | analysis·tool |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Analysis::soap·3" | 135 | .IX·Title·"Bio::Tools::Run::Analysis::soap·3" |
| 136 | .TH·Bio::Tools::Run::Analysis::soap·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Analysis::soap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Analysis::soap·\-·A·SOAP\-based·access·to·the·analysis·tools | 142 | Bio::Tools::Run::Analysis::soap·\-·A·SOAP\-based·access·to·the·analysis·tools |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::AnalysisFactory·3" | 135 | .IX·Title·"Bio::Tools::Run::AnalysisFactory·3" |
| 136 | .TH·Bio::Tools::Run::AnalysisFactory·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::AnalysisFactory·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::AnalysisFactory·\-·A·directory·of·analysis·tools | 142 | Bio::Tools::Run::AnalysisFactory·\-·A·directory·of·analysis·tools |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::AnalysisFactory::soap·3" | 135 | .IX·Title·"Bio::Tools::Run::AnalysisFactory::soap·3" |
| 136 | .TH·Bio::Tools::Run::AnalysisFactory::soap·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::AnalysisFactory::soap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::AnalysisFactory::soap·\-·A·SOAP\-based·access·to·the·list·of·analysis·tools | 142 | Bio::Tools::Run::AnalysisFactory::soap·\-·A·SOAP\-based·access·to·the·list·of·analysis·tools |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::AssemblerBase·3" | 135 | .IX·Title·"Bio::Tools::Run::AssemblerBase·3" |
| 136 | .TH·Bio::Tools::Run::AssemblerBase·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::AssemblerBase·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::AssemblerBase·\-·base·class·for·wrapping·external·assemblers | 142 | Bio::Tools::Run::AssemblerBase·\-·base·class·for·wrapping·external·assemblers |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::BEDTools·3" | 135 | .IX·Title·"Bio::Tools::Run::BEDTools·3" |
| 136 | .TH·Bio::Tools::Run::BEDTools·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::BEDTools·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::BEDTools·\-·Run·wrapper·for·the·BEDTools·suite·of·programs·*BETA* | 142 | Bio::Tools::Run::BEDTools·\-·Run·wrapper·for·the·BEDTools·suite·of·programs·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::BEDTools::Config·3" | 135 | .IX·Title·"Bio::Tools::Run::BEDTools::Config·3" |
| 136 | .TH·Bio::Tools::Run::BEDTools::Config·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::BEDTools::Config·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::BEDTools::Config·\-·Configuration·data·for·bowtie·commands | 142 | Bio::Tools::Run::BEDTools::Config·\-·Configuration·data·for·bowtie·commands |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::BWA·3" | 135 | .IX·Title·"Bio::Tools::Run::BWA·3" |
| 136 | .TH·Bio::Tools::Run::BWA·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::BWA·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::BWA·\-·Run·wrapper·for·the·BWA·short\-read·assembler·*BETA* | 142 | Bio::Tools::Run::BWA·\-·Run·wrapper·for·the·BWA·short\-read·assembler·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::BWA::Config·3" | 135 | .IX·Title·"Bio::Tools::Run::BWA::Config·3" |
| 136 | .TH·Bio::Tools::Run::BWA::Config·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::BWA::Config·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::BWA::Config·\-·Configuration·data·for·BWA·commands | 142 | Bio::Tools::Run::BWA::Config·\-·Configuration·data·for·BWA·commands |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::BlastPlus·3" | 135 | .IX·Title·"Bio::Tools::Run::BlastPlus·3" |
| 136 | .TH·Bio::Tools::Run::BlastPlus·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::BlastPlus·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::BlastPlus·\-·A·wrapper·for·NCBI's·blast+·suite | 142 | Bio::Tools::Run::BlastPlus·\-·A·wrapper·for·NCBI's·blast+·suite |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Bowtie·3" | 135 | .IX·Title·"Bio::Tools::Run::Bowtie·3" |
| 136 | .TH·Bio::Tools::Run::Bowtie·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Bowtie·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Bowtie·\-·Run·wrapper·for·the·Bowtie·short\-read·assembler·*BETA* | 142 | Bio::Tools::Run::Bowtie·\-·Run·wrapper·for·the·Bowtie·short\-read·assembler·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Bowtie::Config·3" | 135 | .IX·Title·"Bio::Tools::Run::Bowtie::Config·3" |
| 136 | .TH·Bio::Tools::Run::Bowtie::Config·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Bowtie::Config·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Bowtie::Config·\-·Configuration·data·for·bowtie·commands | 142 | Bio::Tools::Run::Bowtie::Config·\-·Configuration·data·for·bowtie·commands |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Cap3·3" | 135 | .IX·Title·"Bio::Tools::Run::Cap3·3" |
| 136 | .TH·Bio::Tools::Run::Cap3·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Cap3·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Cap3·\-·wrapper·for·CAP3 | 142 | Bio::Tools::Run::Cap3·\-·wrapper·for·CAP3 |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Coil·3" | 135 | .IX·Title·"Bio::Tools::Run::Coil·3" |
| 136 | .TH·Bio::Tools::Run::Coil·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Coil·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Coil·\-·wrapper·for·ncoils·program | 142 | Bio::Tools::Run::Coil·\-·wrapper·for·ncoils·program |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::EMBOSSApplication·3" | 135 | .IX·Title·"Bio::Tools::Run::EMBOSSApplication·3" |
| 136 | .TH·Bio::Tools::Run::EMBOSSApplication·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::EMBOSSApplication·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::EMBOSSApplication·\-·class·for·EMBOSS·Applications | 142 | Bio::Tools::Run::EMBOSSApplication·\-·class·for·EMBOSS·Applications |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::EMBOSSacd·3" | 135 | .IX·Title·"Bio::Tools::Run::EMBOSSacd·3" |
| 136 | .TH·Bio::Tools::Run::EMBOSSacd·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::EMBOSSacd·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::EMBOSSacd·\-·class·for·EMBOSS·Application·qualifiers | 142 | Bio::Tools::Run::EMBOSSacd·\-·class·for·EMBOSS·Application·qualifiers |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::ERPIN·3" | 135 | .IX·Title·"Bio::Tools::Run::ERPIN·3" |
| 136 | .TH·Bio::Tools::Run::ERPIN·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::ERPIN·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::ERPIN·\-·Wrapper·for·local·execution·of·the·ERPIN·suite·of | 142 | Bio::Tools::Run::ERPIN·\-·Wrapper·for·local·execution·of·the·ERPIN·suite·of |
| 143 | programs. | 143 | programs. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Ensembl·3" | 135 | .IX·Title·"Bio::Tools::Run::Ensembl·3" |
| 136 | .TH·Bio::Tools::Run::Ensembl·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Ensembl·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Ensembl·\-·A·simplified·front\-end·for·setting·up·the·registry | 142 | Bio::Tools::Run::Ensembl·\-·A·simplified·front\-end·for·setting·up·the·registry |
| 143 | ···························for,·and·then·using·an·Ensembl·database·with·the | 143 | ···························for,·and·then·using·an·Ensembl·database·with·the |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Eponine·3" | 135 | .IX·Title·"Bio::Tools::Run::Eponine·3" |
| 136 | .TH·Bio::Tools::Run::Eponine·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Eponine·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Eponine·\-·Object·for·execution·of·the·Eponine·which | 142 | Bio::Tools::Run::Eponine·\-·Object·for·execution·of·the·Eponine·which |
| 143 | is·a·mammalian·TSS·predictor | 143 | is·a·mammalian·TSS·predictor |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::FootPrinter·3" | 135 | .IX·Title·"Bio::Tools::Run::FootPrinter·3" |
| 136 | .TH·Bio::Tools::Run::FootPrinter·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::FootPrinter·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::FootPrinter·\-·wrapper·for·the·FootPrinter·program | 142 | Bio::Tools::Run::FootPrinter·\-·wrapper·for·the·FootPrinter·program |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Genemark·3" | 135 | .IX·Title·"Bio::Tools::Run::Genemark·3" |
| 136 | .TH·Bio::Tools::Run::Genemark·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Genemark·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Genemark·\-·Wrapper·for·local·execution·of·the·GeneMark | 142 | Bio::Tools::Run::Genemark·\-·Wrapper·for·local·execution·of·the·GeneMark |
| 143 | family·of·programs. | 143 | family·of·programs. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Genewise·3" | 135 | .IX·Title·"Bio::Tools::Run::Genewise·3" |
| 136 | .TH·Bio::Tools::Run::Genewise·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Genewise·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Genewise·\-·Object·for·predicting·genes·in·a | 142 | Bio::Tools::Run::Genewise·\-·Object·for·predicting·genes·in·a |
| 143 | given·sequence·given·a·protein | 143 | given·sequence·given·a·protein |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Genscan·3" | 135 | .IX·Title·"Bio::Tools::Run::Genscan·3" |
| 136 | .TH·Bio::Tools::Run::Genscan·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Genscan·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Genscan·\-·Object·for·identifying·genes·in·a | 142 | Bio::Tools::Run::Genscan·\-·Object·for·identifying·genes·in·a |
| 143 | given·sequence·given·a·matrix(for·appropriate·organisms). | 143 | given·sequence·given·a·matrix(for·appropriate·organisms). |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Glimmer·3" | 135 | .IX·Title·"Bio::Tools::Run::Glimmer·3" |
| 136 | .TH·Bio::Tools::Run::Glimmer·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Glimmer·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Glimmer·\-·Wrapper·for·local·execution·of·Glimmer, | 142 | Bio::Tools::Run::Glimmer·\-·Wrapper·for·local·execution·of·Glimmer, |
| 143 | GlimmerM·and·GlimmerHMM. | 143 | GlimmerM·and·GlimmerHMM. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Hmmer·3" | 135 | .IX·Title·"Bio::Tools::Run::Hmmer·3" |
| 136 | .TH·Bio::Tools::Run::Hmmer·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Hmmer·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Hmmer·\-·Wrapper·for·local·execution·of·hmmalign,·hmmbuild, | 142 | Bio::Tools::Run::Hmmer·\-·Wrapper·for·local·execution·of·hmmalign,·hmmbuild, |
| 143 | hmmcalibrate,·hmmemit,·hmmpfam,·hmmsearch | 143 | hmmcalibrate,·hmmemit,·hmmpfam,·hmmsearch |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Infernal·3" | 135 | .IX·Title·"Bio::Tools::Run::Infernal·3" |
| 136 | .TH·Bio::Tools::Run::Infernal·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Infernal·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Infernal·\-·Wrapper·for·local·execution·of·cmalign,·cmbuild, | 142 | Bio::Tools::Run::Infernal·\-·Wrapper·for·local·execution·of·cmalign,·cmbuild, |
| 143 | cmsearch,·cmscore | 143 | cmsearch,·cmscore |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::MCS·3" | 135 | .IX·Title·"Bio::Tools::Run::MCS·3" |
| 136 | .TH·Bio::Tools::Run::MCS·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::MCS·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::MCS·\-·Wrapper·for·MCS | 142 | Bio::Tools::Run::MCS·\-·Wrapper·for·MCS |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Maq·3" | 135 | .IX·Title·"Bio::Tools::Run::Maq·3" |
| 136 | .TH·Bio::Tools::Run::Maq·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Maq·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Maq·\-·Run·wrapper·for·the·Maq·short\-read·assembler·*BETA* | 142 | Bio::Tools::Run::Maq·\-·Run·wrapper·for·the·Maq·short\-read·assembler·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Maq::Config·3" | 135 | .IX·Title·"Bio::Tools::Run::Maq::Config·3" |
| 136 | .TH·Bio::Tools::Run::Maq::Config·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Maq::Config·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Maq::Config·\-·Configuration·data·for·maq·commands | 142 | Bio::Tools::Run::Maq::Config·\-·Configuration·data·for·maq·commands |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Match·3" | 135 | .IX·Title·"Bio::Tools::Run::Match·3" |
| 136 | .TH·Bio::Tools::Run::Match·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Match·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Match·\-·Wrapper·for·Transfac's·match(TM) | 142 | Bio::Tools::Run::Match·\-·Wrapper·for·Transfac's·match(TM) |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Mdust·3" | 135 | .IX·Title·"Bio::Tools::Run::Mdust·3" |
| 136 | .TH·Bio::Tools::Run::Mdust·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Mdust·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Mdust·\-·Perl·extension·for·Mdust·nucleotide·filtering | 142 | Mdust·\-·Perl·extension·for·Mdust·nucleotide·filtering |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Meme·3" | 135 | .IX·Title·"Bio::Tools::Run::Meme·3" |
| 136 | .TH·Bio::Tools::Run::Meme·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Meme·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Meme·\-·Wrapper·for·Meme·Program | 142 | Bio::Tools::Run::Meme·\-·Wrapper·for·Meme·Program |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Minimo·3" | 135 | .IX·Title·"Bio::Tools::Run::Minimo·3" |
| 136 | .TH·Bio::Tools::Run::Minimo·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Minimo·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | .Vb·1 | 142 | .Vb·1 |
| 143 | \&··Bio::Tools::Run::Minimo·\-·Wrapper·for·local·execution·of·the·Minimo·assembler | 143 | \&··Bio::Tools::Run::Minimo·\-·Wrapper·for·local·execution·of·the·Minimo·assembler |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Newbler·3" | 135 | .IX·Title·"Bio::Tools::Run::Newbler·3" |
| 136 | .TH·Bio::Tools::Run::Newbler·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Newbler·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | .Vb·1 | 142 | .Vb·1 |
| 143 | \&··Bio::Tools::Run::Newbler·\-·Wrapper·for·local·execution·of·Newbler | 143 | \&··Bio::Tools::Run::Newbler·\-·Wrapper·for·local·execution·of·Newbler |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phrap·3" | 135 | .IX·Title·"Bio::Tools::Run::Phrap·3" |
| 136 | .TH·Bio::Tools::Run::Phrap·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phrap·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phrap·\-·a·wrapper·for·running·Phrap | 142 | Bio::Tools::Run::Phrap·\-·a·wrapper·for·running·Phrap |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::FastTree·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::FastTree·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::FastTree·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::FastTree·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::FastTree | 142 | Bio::Tools::Run::Phylo::FastTree |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Gerp·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Gerp·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Gerp·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Gerp·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Gerp·\-·Wrapper·for·GERP | 142 | Bio::Tools::Run::Gerp·\-·Wrapper·for·GERP |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Gumby·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Gumby·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Gumby·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Gumby·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Gumby·\-·Wrapper·for·gumby | 142 | Bio::Tools::Run::Phylo::Gumby·\-·Wrapper·for·gumby |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::Base·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::Base·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::Base·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::Base·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::Base·\-·Hyphy·wrapping·base·methods | 142 | Bio::Tools::Run::Phylo::Hyphy::Base·\-·Hyphy·wrapping·base·methods |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::BatchFile·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::BatchFile·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::BatchFile·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::BatchFile·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::BatchFile·\-·Wrapper·for·custom·execution·of·Hyphy·batch·files | 142 | Bio::Tools::Run::Phylo::Hyphy::BatchFile·\-·Wrapper·for·custom·execution·of·Hyphy·batch·files |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::FEL·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::FEL·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::FEL·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::FEL·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::FEL·\-·Wrapper·around·the·Hyphy·FEL·analysis | 142 | Bio::Tools::Run::Phylo::Hyphy::FEL·\-·Wrapper·around·the·Hyphy·FEL·analysis |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::Modeltest·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::Modeltest·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::Modeltest·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::Modeltest·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::Modeltest·\-·Wrapper·around·the·Hyphy·Modeltest·analysis | 142 | Bio::Tools::Run::Phylo::Hyphy::Modeltest·\-·Wrapper·around·the·Hyphy·Modeltest·analysis |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::REL·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::REL·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::REL·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::REL·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::REL·\-·Wrapper·around·the·Hyphy·REL·analysis | 142 | Bio::Tools::Run::Phylo::Hyphy::REL·\-·Wrapper·around·the·Hyphy·REL·analysis |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::SLAC·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Hyphy::SLAC·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::SLAC·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Hyphy::SLAC·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Hyphy::SLAC·\-·Wrapper·around·the·Hyphy·SLAC·analysis | 142 | Bio::Tools::Run::Phylo::Hyphy::SLAC·\-·Wrapper·around·the·Hyphy·SLAC·analysis |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::LVB·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::LVB·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::LVB·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::LVB·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::LVB·\-·Object·for·using·the·LVB·program·to·create | 142 | Bio::Tools::Run::Phylo::LVB·\-·Object·for·using·the·LVB·program·to·create |
| 143 | an·array·of·Bio::Tree·objects·from·a·nucleotide·multiple·alignment | 143 | an·array·of·Bio::Tree·objects·from·a·nucleotide·multiple·alignment |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Molphy::ProtML·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Molphy::ProtML·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Molphy::ProtML·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Molphy::ProtML·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Molphy::ProtML·\-·A·wrapper·for·the·Molphy·pkg·app·ProtML | 142 | Bio::Tools::Run::Phylo::Molphy::ProtML·\-·A·wrapper·for·the·Molphy·pkg·app·ProtML |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Njtree::Best·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Njtree::Best·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Njtree::Best·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Njtree::Best·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Njtree::Best·\-·Wrapper·around·the·Njtree·(Njtree/phyml)·best·program. | 142 | Bio::Tools::Run::Phylo::Njtree::Best·\-·Wrapper·around·the·Njtree·(Njtree/phyml)·best·program. |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Baseml·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Baseml·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::PAML::Baseml·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::PAML::Baseml·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::PAML::Baseml·\-·Wrapper·aroud·the·PAML·program·baseml | 142 | Bio::Tools::Run::Phylo::PAML::Baseml·\-·Wrapper·aroud·the·PAML·program·baseml |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Codeml·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Codeml·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::PAML::Codeml·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::PAML::Codeml·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::PAML::Codeml·\-·Wrapper·aroud·the·PAML·program·codeml | 142 | Bio::Tools::Run::Phylo::PAML::Codeml·\-·Wrapper·aroud·the·PAML·program·codeml |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Evolver·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Evolver·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::PAML::Evolver·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::PAML::Evolver·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::PAML::Evolver·\-·Wrapper·aroud·the·PAML·program·evolver | 142 | Bio::Tools::Run::Phylo::PAML::Evolver·\-·Wrapper·aroud·the·PAML·program·evolver |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Yn00·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::PAML::Yn00·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::PAML::Yn00·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::PAML::Yn00·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::PAML::Yn00·\-·Wrapper·aroud·the·PAML·program·yn00 | 142 | Bio::Tools::Run::Phylo::PAML::Yn00·\-·Wrapper·aroud·the·PAML·program·yn00 |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phast::PhastCons·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phast::PhastCons·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phast::PhastCons·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phast::PhastCons·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phast::PhastCons·\-·Wrapper·for·footprinting·using | 142 | Bio::Tools::Run::Phylo::Phast::PhastCons·\-·Wrapper·for·footprinting·using |
| 143 | ···········································phastCons | 143 | ···········································phastCons |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phast::PhyloFit·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phast::PhyloFit·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phast::PhyloFit·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phast::PhyloFit·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phast::PhyloFit·\-·Wrapper·for·phyloFit | 142 | Bio::Tools::Run::Phylo::Phast::PhyloFit·\-·Wrapper·for·phyloFit |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Base·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Base·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Base·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Base·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::Base·\-·Base·object·for·Phylip·modules | 142 | Bio::Tools::Run::Phylo::Phylip::Base·\-·Base·object·for·Phylip·modules |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Consense·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Consense·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Consense·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Consense·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::Consense·\-·Wrapper·for·the·phylip | 142 | Bio::Tools::Run::Phylo::Phylip::Consense·\-·Wrapper·for·the·phylip |
| 143 | program·Consense | 143 | program·Consense |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::DrawGram·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::DrawGram·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::DrawGram·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::DrawGram·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::DrawGram·\-·use·Phylip·DrawTree·program·to·draw·phylograms·or·phenograms | 142 | Bio::Tools::Run::Phylo::Phylip::DrawGram·\-·use·Phylip·DrawTree·program·to·draw·phylograms·or·phenograms |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::DrawTree·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::DrawTree·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::DrawTree·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::DrawTree·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::DrawTree·\-·use·Phylip·DrawTree· | 142 | Bio::Tools::Run::Phylo::Phylip::DrawTree·\-·use·Phylip·DrawTree· |
| 143 | program·to·draw·trees | 143 | program·to·draw·trees |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Neighbor·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::Neighbor·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Neighbor·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::Neighbor·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::Neighbor·\-·Wrapper·for·the·phylip | 142 | Bio::Tools::Run::Phylo::Phylip::Neighbor·\-·Wrapper·for·the·phylip |
| 143 | program·neighbor·by·Joseph·Felsenstein·for·creating·a·phylogenetic | 143 | program·neighbor·by·Joseph·Felsenstein·for·creating·a·phylogenetic |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::PhylipConf·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::PhylipConf·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::PhylipConf·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::PhylipConf·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::PhylipConf | 142 | Bio::Tools::Run::Phylo::Phylip::PhylipConf |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::ProtDist·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::ProtDist·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::ProtDist·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::ProtDist·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::ProtDist·\-·Wrapper·for·the·phylip | 142 | Bio::Tools::Run::Phylo::Phylip::ProtDist·\-·Wrapper·for·the·phylip |
| 143 | program·protdist | 143 | program·protdist |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::ProtPars·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::ProtPars·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::ProtPars·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::ProtPars·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::ProtPars·\-·Object·for·creating·a·Bio::Tree·object·from·a·multiple·alignment·file·or·a·SimpleAlign·object | 142 | Bio::Tools::Run::Phylo::Phylip::ProtPars·\-·Object·for·creating·a·Bio::Tree·object·from·a·multiple·alignment·file·or·a·SimpleAlign·object |
| 143 | .PP | 143 | .PP |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::SeqBoot·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phylip::SeqBoot·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phylip::SeqBoot·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phylip::SeqBoot·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phylip::SeqBoot·\-·Wrapper·for·the·phylip | 142 | Bio::Tools::Run::Phylo::Phylip::SeqBoot·\-·Wrapper·for·the·phylip |
| 143 | program·SeqBoot | 143 | program·SeqBoot |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::PhyloBase·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::PhyloBase·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::PhyloBase·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::PhyloBase·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::PhyloBase\-·base·module·for·phylo·wrappers | 142 | Bio::Tools::Run::Phylo::PhyloBase\-·base·module·for·phylo·wrappers |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phyml·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Phyml·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Phyml·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Phyml·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Phyml·\-·Wrapper·for·rapid·reconstruction·of·phylogenies·using·Phyml | 142 | Bio::Tools::Run::Phylo::Phyml·\-·Wrapper·for·rapid·reconstruction·of·phylogenies·using·Phyml |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::QuickTree·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::QuickTree·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::QuickTree·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::QuickTree·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::QuickTree·\-·Wrapper·for·rapid·reconstruction·of | 142 | Bio::Tools::Run::Phylo::QuickTree·\-·Wrapper·for·rapid·reconstruction·of |
| 143 | ····································phylogenies·using·QuickTree | 143 | ····································phylogenies·using·QuickTree |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Raxml·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Raxml·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Raxml·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Raxml·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Raxml | 142 | Bio::Tools::Run::Phylo::Raxml |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::SLR·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::SLR·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::SLR·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::SLR·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::SLR·\-·Wrapper·around·the·SLR·program | 142 | Bio::Tools::Run::Phylo::SLR·\-·Wrapper·around·the·SLR·program |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Phylo::Semphy·3" | 135 | .IX·Title·"Bio::Tools::Run::Phylo::Semphy·3" |
| 136 | .TH·Bio::Tools::Run::Phylo::Semphy·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Phylo::Semphy·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Phylo::Semphy·\-·Wrapper·for·Semphy | 142 | Bio::Tools::Run::Phylo::Semphy·\-·Wrapper·for·Semphy |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Primate·3" | 135 | .IX·Title·"Bio::Tools::Run::Primate·3" |
| 136 | .TH·Bio::Tools::Run::Primate·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Primate·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Wrapper·for·Primate,··Guy·Slater's·near·exact·match·finder·for·short·sequence | 142 | Wrapper·for·Primate,··Guy·Slater's·near·exact·match·finder·for·short·sequence |
| 143 | tags. | 143 | tags. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Primer3·3" | 135 | .IX·Title·"Bio::Tools::Run::Primer3·3" |
| 136 | .TH·Bio::Tools::Run::Primer3·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Primer3·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Primer3·\-·Create·input·for·and·work·with·the·output· | 142 | Bio::Tools::Run::Primer3·\-·Create·input·for·and·work·with·the·output· |
| 143 | from·the·program·primer3 | 143 | from·the·program·primer3 |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Prints·3" | 135 | .IX·Title·"Bio::Tools::Run::Prints·3" |
| 136 | .TH·Bio::Tools::Run::Prints·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Prints·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Prints | 142 | Bio::Tools::Run::Prints |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Profile·3" | 135 | .IX·Title·"Bio::Tools::Run::Profile·3" |
| 136 | .TH·Bio::Tools::Run::Profile·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Profile·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Profile | 142 | Bio::Tools::Run::Profile |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Promoterwise·3" | 135 | .IX·Title·"Bio::Tools::Run::Promoterwise·3" |
| 136 | .TH·Bio::Tools::Run::Promoterwise·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Promoterwise·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Promoterwise·\-·Wrapper·for·aligning·two·sequences·using | 142 | Bio::Tools::Run::Promoterwise·\-·Wrapper·for·aligning·two·sequences·using |
| 143 | promoterwise | 143 | promoterwise |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Pseudowise·3" | 135 | .IX·Title·"Bio::Tools::Run::Pseudowise·3" |
| 136 | .TH·Bio::Tools::Run::Pseudowise·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Pseudowise·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Pseudowise·\-·Object·for·prediting·pseudogenes·in·a | 142 | Bio::Tools::Run::Pseudowise·\-·Object·for·prediting·pseudogenes·in·a |
| 143 | given·sequence·given·a·protein·and·a·cdna·sequence | 143 | given·sequence·given·a·protein·and·a·cdna·sequence |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::RNAMotif·3" | 135 | .IX·Title·"Bio::Tools::Run::RNAMotif·3" |
| 136 | .TH·Bio::Tools::Run::RNAMotif·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::RNAMotif·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::RNAMotif·\-·Wrapper·for·local·execution·of·rnamotif,·rm2ct, | 142 | Bio::Tools::Run::RNAMotif·\-·Wrapper·for·local·execution·of·rnamotif,·rm2ct, |
| 143 | rmfmt,·rmprune | 143 | rmfmt,·rmprune |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::RepeatMasker·3" | 135 | .IX·Title·"Bio::Tools::Run::RepeatMasker·3" |
| 136 | .TH·Bio::Tools::Run::RepeatMasker·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::RepeatMasker·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::RepeatMasker·\-·Wrapper·for·RepeatMasker·Program | 142 | Bio::Tools::Run::RepeatMasker·\-·Wrapper·for·RepeatMasker·Program |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Samtools·3" | 135 | .IX·Title·"Bio::Tools::Run::Samtools·3" |
| 136 | .TH·Bio::Tools::Run::Samtools·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Samtools·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Samtools·\-·a·run·wrapper·for·the·samtools·suite·*BETA* | 142 | Bio::Tools::Run::Samtools·\-·a·run·wrapper·for·the·samtools·suite·*BETA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Samtools::Config·3" | 135 | .IX·Title·"Bio::Tools::Run::Samtools::Config·3" |
| 136 | .TH·Bio::Tools::Run::Samtools::Config·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Samtools::Config·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Samtools::Config·\-·configurator·for·Bio::Tools::Run::Samtools | 142 | Bio::Tools::Run::Samtools::Config·\-·configurator·for·Bio::Tools::Run::Samtools |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Seg·3" | 135 | .IX·Title·"Bio::Tools::Run::Seg·3" |
| 136 | .TH·Bio::Tools::Run::Seg·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Seg·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Seg·\-·Object·for·identifying·low·complexity | 142 | Bio::Tools::Run::Seg·\-·Object·for·identifying·low·complexity |
| 143 | ··regions·in·a·given·protein·seequence. | 143 | ··regions·in·a·given·protein·seequence. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Signalp·3" | 135 | .IX·Title·"Bio::Tools::Run::Signalp·3" |
| 136 | .TH·Bio::Tools::Run::Signalp·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Signalp·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Signalp | 142 | Bio::Tools::Run::Signalp |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Simprot·3" | 135 | .IX·Title·"Bio::Tools::Run::Simprot·3" |
| 136 | .TH·Bio::Tools::Run::Simprot·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Simprot·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Simprot·\-·Wrapper·around·the·Simprot·program.·Wrapper·for·the·calculation·of·a·multiple·sequence·alignment·from·a·phylogenetic·tree | 142 | Bio::Tools::Run::Simprot·\-·Wrapper·around·the·Simprot·program.·Wrapper·for·the·calculation·of·a·multiple·sequence·alignment·from·a·phylogenetic·tree |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::StandAloneBlastPlus·3" | 135 | .IX·Title·"Bio::Tools::Run::StandAloneBlastPlus·3" |
| 136 | .TH·Bio::Tools::Run::StandAloneBlastPlus·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::StandAloneBlastPlus·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::StandAloneBlastPlus·\-·Compute·with·NCBI's·blast+·suite·*ALPHA* | 142 | Bio::Tools::Run::StandAloneBlastPlus·\-·Compute·with·NCBI's·blast+·suite·*ALPHA* |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·3" | 135 | .IX·Title·"Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·3" |
| 136 | .TH·Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·\-·Provides·BLAST·methods·to·StandAloneBlastPlus | 142 | Bio::Tools::Run::StandAloneBlastPlus::BlastMethods·\-·Provides·BLAST·methods·to·StandAloneBlastPlus |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::TigrAssembler·3" | 135 | .IX·Title·"Bio::Tools::Run::TigrAssembler·3" |
| 136 | .TH·Bio::Tools::Run::TigrAssembler·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::TigrAssembler·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::TigrAssembler·\-·Wrapper·for·local·execution·of·TIGR·Assembler | 142 | Bio::Tools::Run::TigrAssembler·\-·Wrapper·for·local·execution·of·TIGR·Assembler |
| 143 | ·v2 | 143 | ·v2 |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Tmhmm·3" | 135 | .IX·Title·"Bio::Tools::Run::Tmhmm·3" |
| 136 | .TH·Bio::Tools::Run::Tmhmm·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Tmhmm·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Tmhmm·\-·Object·for·identifying·transmembrane·helixes | 142 | Bio::Tools::Run::Tmhmm·\-·Object·for·identifying·transmembrane·helixes |
| 143 | ··in·a·given·protein·seequence. | 143 | ··in·a·given·protein·seequence. |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::TribeMCL·3" | 135 | .IX·Title·"Bio::Tools::Run::TribeMCL·3" |
| 136 | .TH·Bio::Tools::Run::TribeMCL·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::TribeMCL·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::TribeMCL | 142 | Bio::Tools::Run::TribeMCL |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::Vista·3" | 135 | .IX·Title·"Bio::Tools::Run::Vista·3" |
| 136 | .TH·Bio::Tools::Run::Vista·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::Vista·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::Vista | 142 | Bio::Tools::Run::Vista |
| 143 | .PP | 143 | .PP |
| Offset 129, 15 lines modified | Offset 129, 15 lines modified | ||
| 129 | .····ds·ae·ae | 129 | .····ds·ae·ae |
| 130 | .····ds·Ae·AE | 130 | .····ds·Ae·AE |
| 131 | .\} | 131 | .\} |
| 132 | .rm·#[·#]·#H·#V·#F·C | 132 | .rm·#[·#]·#H·#V·#F·C |
| 133 | .\"·======================================================================== | 133 | .\"·======================================================================== |
| 134 | .\" | 134 | .\" |
| 135 | .IX·Title·"Bio::Tools::Run::tRNAscanSE·3" | 135 | .IX·Title·"Bio::Tools::Run::tRNAscanSE·3" |
| 136 | .TH·Bio::Tools::Run::tRNAscanSE·3·"2016-06-1 | 136 | .TH·Bio::Tools::Run::tRNAscanSE·3·"2016-06-12"·"perl·v5.20.3"·"User·Contributed·Perl·Documentation" |
| 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes | 137 | .\"·For·nroff,·turn·off·justification.··Always·turn·off·hyphenation;·it·makes |
| 138 | .\"·way·too·many·mistakes·in·technical·documents. | 138 | .\"·way·too·many·mistakes·in·technical·documents. |
| 139 | .if·n·.ad·l | 139 | .if·n·.ad·l |
| 140 | .nh | 140 | .nh |
| 141 | .SH·"NAME" | 141 | .SH·"NAME" |
| 142 | Bio::Tools::Run::tRNAscanSE·\-·Wrapper·for·local·execution·of·tRNAscan\-SE | 142 | Bio::Tools::Run::tRNAscanSE·\-·Wrapper·for·local·execution·of·tRNAscan\-SE |
| 143 | .SH·"SYNOPSIS" | 143 | .SH·"SYNOPSIS" |