/usr/local/poudriere/data/packages/e24a8cae34360705d022f17584bb6b4507b8eb89-build1/All/cd-hit-4.6.4.txz vs.
/usr/local/poudriere/data/packages/e24a8cae34360705d022f17584bb6b4507b8eb89-build2/All/cd-hit-4.6.4.txz
cd-hit-4.6.4.txz-content
+MANIFEST
Offset 1, 1 lines modifiedOffset 1, 1 lines modified
1 {"name":​"cd-​hit",​"origin":​"biology/​cd-​hit",​"version":​"4.​6.​4",​"comment":​"Clustering·​and·​comparing·​protein·​or·​nucleotide·​sequences",​"maintainer":​"bacon4000@gmail.​com",​"www":​"http:​/​/​weizhong-​lab.​ucsd.​edu/​cd-​hit/​",​"abi":​"FreeBSD:​11:​amd64",​"arch":​"freebsd:​11:​x86:​64",​"prefix":​"/​usr/​local",​"flatsize":​832393,​"licenselogic":​"single",​"licenses":​["GPLv2"],​"desc":​"CD-​HIT·​is·​a·​very·​widely·​used·​program·​for·​clustering·​and·​comparing·​protein·​or\nnucleotide·​sequences.​\n\nWWW:​·​http:​/​/​weizhong-​lab.​ucsd.​edu/​cd-​hit/​",​"deps":​{"gcc":​{"origin":​"lang/​gcc",​"version":​"4.​8.​5_2"}},​"categories":​["biology"],​"shlibs_required":​["libstdc++.​so.​6",​"libgomp.​so.​1",​"libgcc_s.​so.​1"],​"files":​{"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​catalog.​mk":​"1$21d8d20fc22e82f1ba​f5939a5f7a2c504891d1f​24b0fb845bd7d4390f2a0​e99b",​"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​LICENSE":​"1$7e1394d03c5f275a40​2fe721ff1d1349449ea86​02b52af954c76463afcdb​6ef7",​"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​GPLv2":​"1$8177f97513213526df​2cf6184d8ff986c675afb​514d4e68a404010521b88​0643",​"/​usr/​loc·​✂1 {"name":​"cd-​hit",​"origin":​"biology/​cd-​hit",​"version":​"4.​6.​4",​"comment":​"Clustering·​and·​comparing·​protein·​or·​nucleotide·​sequences",​"maintainer":​"bacon4000@gmail.​com",​"www":​"http:​/​/​weizhong-​lab.​ucsd.​edu/​cd-​hit/​",​"abi":​"FreeBSD:​11:​amd64",​"arch":​"freebsd:​11:​x86:​64",​"prefix":​"/​usr/​local",​"flatsize":​832393,​"licenselogic":​"single",​"licenses":​["GPLv2"],​"desc":​"CD-​HIT·​is·​a·​very·​widely·​used·​program·​for·​clustering·​and·​comparing·​protein·​or\nnucleotide·​sequences.​\n\nWWW:​·​http:​/​/​weizhong-​lab.​ucsd.​edu/​cd-​hit/​",​"deps":​{"gcc":​{"origin":​"lang/​gcc",​"version":​"4.​8.​5_2"}},​"categories":​["biology"],​"shlibs_required":​["libstdc++.​so.​6",​"libgomp.​so.​1",​"libgcc_s.​so.​1"],​"files":​{"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​catalog.​mk":​"1$21d8d20fc22e82f1ba​f5939a5f7a2c504891d1f​24b0fb845bd7d4390f2a0​e99b",​"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​LICENSE":​"1$7e1394d03c5f275a40​2fe721ff1d1349449ea86​02b52af954c76463afcdb​6ef7",​"/​usr/​local/​share/​licenses/​cd-​hit-​4.​6.​4/​GPLv2":​"1$8177f97513213526df​2cf6184d8ff986c675afb​514d4e68a404010521b88​0643",​"/​usr/​loc·​✂
/usr/local/bin/cd-hit
objdump --line-numbers --disassemble --section=.text {}
Offset 1674, 16 lines modifiedOffset 1674, 16 lines modified
1674 ··​403e4c:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1674 ··​403e4c:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1675 ··​403e4f:​»       ​53···················»       ​push···​%rbx1675 ··​403e4f:​»       ​53···················»       ​push···​%rbx
1676 ··​403e50:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1676 ··​403e50:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1677 ··​403e57:​»       ​48·​8b·​05·​52·​a1·​21·​00·»       ​mov····​0x21a152(%rip)​,​%rax········1677 ··​403e57:​»       ​48·​8b·​05·​52·​a1·​21·​00·»       ​mov····​0x21a152(%rip)​,​%rax········
1678 ··​403e5e:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1678 ··​403e5e:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1679 ··​403e65:​»       ​00·1679 ··​403e65:​»       ​00·
1680 ··​403e66:​»       ​31·​c0················»       ​xor····​%eax,​%eax1680 ··​403e66:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1681 ··​403e68:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1681 ··​403e68:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1682 ··​403e6f:​»       ​30·​20·​32·1682 ··​403e6f:​»       ​31·​20·​32·
1683 ··​403e72:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1683 ··​403e72:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1684 ··​403e76:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1684 ··​403e76:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1685 ··​403e7a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1685 ··​403e7a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1686 ··​403e7f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1686 ··​403e7f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1687 ··​403e84:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1687 ··​403e84:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1688 ··​403e89:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1688 ··​403e89:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1689 ··​403e90:​»       ​00·1689 ··​403e90:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 87, 16 lines modifiedOffset 87, 16 lines modified
87 ··​0x00417560·​20626520·​75736564·​3a202569·​0a0a0000··​be·​used:​·​%i.​.​.​.​87 ··​0x00417560·​20626520·​75736564·​3a202569·​0a0a0000··​be·​used:​·​%i.​.​.​.​
88 ··​0x00417570·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================88 ··​0x00417570·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
89 ··​0x00417580·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================89 ··​0x00417580·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
90 ··​0x00417590·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================90 ··​0x00417590·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
91 ··​0x004175a0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================91 ··​0x004175a0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
92 ··​0x004175b0·​00000000·​00000000·​50726f67·​72616d3a·​.​.​.​.​.​.​.​.​Program:​92 ··​0x004175b0·​00000000·​00000000·​50726f67·​72616d3a·​.​.​.​.​.​.​.​.​Program:​
93 ··​0x004175c0·​2043442d·​4849542c·​2056342e·​3620282b··​CD-​HIT,​·​V4.​6·​(+93 ··​0x004175c0·​2043442d·​4849542c·​2056342e·​3620282b··​CD-​HIT,​·​V4.​6·​(+
94 ··​0x004175d0·​4f70656e·​4d50292c·​2025732c·​2031323a·​OpenMP)​,​·​%s,​·12:​94 ··​0x004175d0·​4f70656e·​4d50292c·​2025732c·​2032313a·​OpenMP)​,​·​%s,​·21:​
95 ··​0x004175e0·​34383a33·​340a0000·​20202020·​20202020·48:​34.​.​.​········95 ··​0x004175e0·​35303a32·​390a0000·​20202020·​20202020·50:​29.​.​.​········
96 ··​0x004175f0·​20202020·​20202020·​20202020·​20202020·················96 ··​0x004175f0·​20202020·​20202020·​20202020·​20202020·················
97 ··​0x00417600·​20202020·​4f757470·​75742020·​20202020·····​Output······97 ··​0x00417600·​20202020·​4f757470·​75742020·​20202020·····​Output······
98 ··​0x00417610·​20202020·​20202020·​20202020·​20202020·················98 ··​0x00417610·​20202020·​20202020·​20202020·​20202020·················
99 ··​0x00417620·​20202020·​20202020·​00000000·​00000000·········​.​.​.​.​.​.​.​.​99 ··​0x00417620·​20202020·​20202020·​00000000·​00000000·········​.​.​.​.​.​.​.​.​
100 ··​0x00417630·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​100 ··​0x00417630·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
101 ··​0x00417640·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​101 ··​0x00417640·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
102 ··​0x00417650·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​102 ··​0x00417650·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 780, 9 lines modifiedOffset 780, 9 lines modified
780 ··​0x0061ddf0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·780 ··​0x0061ddf0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
781 ··​0x0061de00·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor781 ··​0x0061de00·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
782 ··​0x0061de10·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1782 ··​0x0061de10·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
783 ··​0x0061de20·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​783 ··​0x0061de20·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
784 ··​0x0061de30·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​784 ··​0x0061de30·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
785 ··​0x0061de40·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·785 ··​0x0061de40·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
786 ··​0x0061de50·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui786 ··​0x0061de50·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
787 ··​0x0061de60·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201787 ··​0x0061de60·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
788 ··​0x0061de70·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​788 ··​0x0061de70·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​
/usr/local/bin/cd-hit-2d
objdump --line-numbers --disassemble --section=.text {}
Offset 1740, 16 lines modifiedOffset 1740, 16 lines modified
1740 ··​403f8c:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1740 ··​403f8c:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1741 ··​403f8f:​»       ​53···················»       ​push···​%rbx1741 ··​403f8f:​»       ​53···················»       ​push···​%rbx
1742 ··​403f90:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1742 ··​403f90:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1743 ··​403f97:​»       ​48·​8b·​05·​92·​a1·​21·​00·»       ​mov····​0x21a192(%rip)​,​%rax········1743 ··​403f97:​»       ​48·​8b·​05·​92·​a1·​21·​00·»       ​mov····​0x21a192(%rip)​,​%rax········
1744 ··​403f9e:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1744 ··​403f9e:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1745 ··​403fa5:​»       ​00·1745 ··​403fa5:​»       ​00·
1746 ··​403fa6:​»       ​31·​c0················»       ​xor····​%eax,​%eax1746 ··​403fa6:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1747 ··​403fa8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1747 ··​403fa8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1748 ··​403faf:​»       ​30·​20·​32·1748 ··​403faf:​»       ​31·​20·​32·
1749 ··​403fb2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1749 ··​403fb2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1750 ··​403fb6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1750 ··​403fb6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1751 ··​403fba:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1751 ··​403fba:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1752 ··​403fbf:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1752 ··​403fbf:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1753 ··​403fc4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1753 ··​403fc4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1754 ··​403fc9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1754 ··​403fc9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1755 ··​403fd0:​»       ​00·1755 ··​403fd0:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 90, 16 lines modifiedOffset 90, 16 lines modified
90 ··​0x004176d0·​20626520·​75736564·​3a202569·​0a0a0000··​be·​used:​·​%i.​.​.​.​90 ··​0x004176d0·​20626520·​75736564·​3a202569·​0a0a0000··​be·​used:​·​%i.​.​.​.​
91 ··​0x004176e0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================91 ··​0x004176e0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
92 ··​0x004176f0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================92 ··​0x004176f0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
93 ··​0x00417700·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================93 ··​0x00417700·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
94 ··​0x00417710·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================94 ··​0x00417710·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
95 ··​0x00417720·​00000000·​00000000·​50726f67·​72616d3a·​.​.​.​.​.​.​.​.​Program:​95 ··​0x00417720·​00000000·​00000000·​50726f67·​72616d3a·​.​.​.​.​.​.​.​.​Program:​
96 ··​0x00417730·​2043442d·​4849542c·​2056342e·​3620282b··​CD-​HIT,​·​V4.​6·​(+96 ··​0x00417730·​2043442d·​4849542c·​2056342e·​3620282b··​CD-​HIT,​·​V4.​6·​(+
97 ··​0x00417740·​4f70656e·​4d50292c·​2025732c·​2031323a·​OpenMP)​,​·​%s,​·12:​97 ··​0x00417740·​4f70656e·​4d50292c·​2025732c·​2032313a·​OpenMP)​,​·​%s,​·21:​
98 ··​0x00417750·​34383a33·​340a0000·​20202020·​20202020·48:​34.​.​.​········98 ··​0x00417750·​35303a32·​390a0000·​20202020·​20202020·50:​29.​.​.​········
99 ··​0x00417760·​20202020·​20202020·​20202020·​20202020·················99 ··​0x00417760·​20202020·​20202020·​20202020·​20202020·················
100 ··​0x00417770·​20202020·​4f757470·​75742020·​20202020·····​Output······100 ··​0x00417770·​20202020·​4f757470·​75742020·​20202020·····​Output······
101 ··​0x00417780·​20202020·​20202020·​20202020·​20202020·················101 ··​0x00417780·​20202020·​20202020·​20202020·​20202020·················
102 ··​0x00417790·​20202020·​20202020·​00000000·​00000000·········​.​.​.​.​.​.​.​.​102 ··​0x00417790·​20202020·​20202020·​00000000·​00000000·········​.​.​.​.​.​.​.​.​
103 ··​0x004177a0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​103 ··​0x004177a0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
104 ··​0x004177b0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​104 ··​0x004177b0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
105 ··​0x004177c0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​105 ··​0x004177c0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 780, 9 lines modifiedOffset 780, 9 lines modified
780 ··​0x0061df70·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·780 ··​0x0061df70·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
781 ··​0x0061df80·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor781 ··​0x0061df80·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
782 ··​0x0061df90·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1782 ··​0x0061df90·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
783 ··​0x0061dfa0·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​783 ··​0x0061dfa0·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
784 ··​0x0061dfb0·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​784 ··​0x0061dfb0·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
785 ··​0x0061dfc0·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·785 ··​0x0061dfc0·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
786 ··​0x0061dfd0·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui786 ··​0x0061dfd0·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
787 ··​0x0061dfe0·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201787 ··​0x0061dfe0·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
788 ··​0x0061dff0·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​788 ··​0x0061dff0·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​
/usr/local/bin/cd-hit-454
objdump --line-numbers --disassemble --section=.text {}
Offset 1702, 16 lines modifiedOffset 1702, 16 lines modified
1702 ··​403edc:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1702 ··​403edc:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1703 ··​403edf:​»       ​53···················»       ​push···​%rbx1703 ··​403edf:​»       ​53···················»       ​push···​%rbx
1704 ··​403ee0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1704 ··​403ee0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1705 ··​403ee7:​»       ​48·​8b·​05·​e2·​a1·​21·​00·»       ​mov····​0x21a1e2(%rip)​,​%rax········1705 ··​403ee7:​»       ​48·​8b·​05·​e2·​a1·​21·​00·»       ​mov····​0x21a1e2(%rip)​,​%rax········
1706 ··​403eee:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1706 ··​403eee:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1707 ··​403ef5:​»       ​00·1707 ··​403ef5:​»       ​00·
1708 ··​403ef6:​»       ​31·​c0················»       ​xor····​%eax,​%eax1708 ··​403ef6:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1709 ··​403ef8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1709 ··​403ef8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1710 ··​403eff:​»       ​30·​20·​32·1710 ··​403eff:​»       ​31·​20·​32·
1711 ··​403f02:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1711 ··​403f02:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1712 ··​403f06:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1712 ··​403f06:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1713 ··​403f0a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1713 ··​403f0a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1714 ··​403f0f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1714 ··​403f0f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1715 ··​403f14:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1715 ··​403f14:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1716 ··​403f19:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1716 ··​403f19:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1717 ··​403f20:​»       ​00·1717 ··​403f20:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 88, 15 lines modifiedOffset 88, 15 lines modified
88 ··​0x00417600·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========88 ··​0x00417600·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========
89 ··​0x00417610·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================89 ··​0x00417610·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
90 ··​0x00417620·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================90 ··​0x00417620·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
91 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================91 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
92 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​92 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​
93 ··​0x00417650·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​93 ··​0x00417650·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​
94 ··​0x00417660·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​94 ··​0x00417660·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​
95 ··​0x00417670·​2025732c·​2031323a·​34383a33·​340a0000··​%s,​·12:​48:​34.​.​.​95 ··​0x00417670·​2025732c·​2032313a·​35303a32·​390a0000··​%s,​·21:​50:​29.​.​.​
96 ··​0x00417680·​20202020·​20202020·​20202020·​20202020·················96 ··​0x00417680·​20202020·​20202020·​20202020·​20202020·················
97 ··​0x00417690·​20202020·​20202020·​20202020·​4f757470·············​Outp97 ··​0x00417690·​20202020·​20202020·​20202020·​4f757470·············​Outp
98 ··​0x004176a0·​75742020·​20202020·​20202020·​20202020·​ut··············98 ··​0x004176a0·​75742020·​20202020·​20202020·​20202020·​ut··············
99 ··​0x004176b0·​20202020·​20202020·​20202020·​20202020·················99 ··​0x004176b0·​20202020·​20202020·​20202020·​20202020·················
100 ··​0x004176c0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​100 ··​0x004176c0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​
101 ··​0x004176d0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​101 ··​0x004176d0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
102 ··​0x004176e0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​102 ··​0x004176e0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 786, 9 lines modifiedOffset 786, 9 lines modified
786 ··​0x0061df10·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·786 ··​0x0061df10·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
787 ··​0x0061df20·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor787 ··​0x0061df20·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
788 ··​0x0061df30·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1788 ··​0x0061df30·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
789 ··​0x0061df40·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​789 ··​0x0061df40·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
790 ··​0x0061df50·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​790 ··​0x0061df50·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
791 ··​0x0061df60·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·791 ··​0x0061df60·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
792 ··​0x0061df70·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui792 ··​0x0061df70·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
793 ··​0x0061df80·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201793 ··​0x0061df80·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
794 ··​0x0061df90·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​794 ··​0x0061df90·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​
/usr/local/bin/cd-hit-div
objdump --line-numbers --disassemble --section=.text {}
Offset 1723, 16 lines modifiedOffset 1723, 16 lines modified
1723 ··​403eac:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1723 ··​403eac:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1724 ··​403eaf:​»       ​53···················»       ​push···​%rbx1724 ··​403eaf:​»       ​53···················»       ​push···​%rbx
1725 ··​403eb0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1725 ··​403eb0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1726 ··​403eb7:​»       ​48·​8b·​05·​d2·​a1·​21·​00·»       ​mov····​0x21a1d2(%rip)​,​%rax········1726 ··​403eb7:​»       ​48·​8b·​05·​d2·​a1·​21·​00·»       ​mov····​0x21a1d2(%rip)​,​%rax········
1727 ··​403ebe:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1727 ··​403ebe:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1728 ··​403ec5:​»       ​00·1728 ··​403ec5:​»       ​00·
1729 ··​403ec6:​»       ​31·​c0················»       ​xor····​%eax,​%eax1729 ··​403ec6:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1730 ··​403ec8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1730 ··​403ec8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1731 ··​403ecf:​»       ​30·​20·​32·1731 ··​403ecf:​»       ​31·​20·​32·
1732 ··​403ed2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1732 ··​403ed2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1733 ··​403ed6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1733 ··​403ed6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1734 ··​403eda:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1734 ··​403eda:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1735 ··​403edf:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1735 ··​403edf:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1736 ··​403ee4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1736 ··​403ee4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1737 ··​403ee9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1737 ··​403ee9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1738 ··​403ef0:​»       ​00·1738 ··​403ef0:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 92, 15 lines modifiedOffset 92, 15 lines modified
92 ··​0x00417610·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========92 ··​0x00417610·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========
93 ··​0x00417620·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================93 ··​0x00417620·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
94 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================94 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
95 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================95 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
96 ··​0x00417650·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​96 ··​0x00417650·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​
97 ··​0x00417660·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​97 ··​0x00417660·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​
98 ··​0x00417670·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​98 ··​0x00417670·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​
99 ··​0x00417680·​2025732c·​2031323a·​34383a33·​340a0000··​%s,​·12:​48:​34.​.​.​99 ··​0x00417680·​2025732c·​2032313a·​35303a32·​390a0000··​%s,​·21:​50:​29.​.​.​
100 ··​0x00417690·​20202020·​20202020·​20202020·​20202020·················100 ··​0x00417690·​20202020·​20202020·​20202020·​20202020·················
101 ··​0x004176a0·​20202020·​20202020·​20202020·​4f757470·············​Outp101 ··​0x004176a0·​20202020·​20202020·​20202020·​4f757470·············​Outp
102 ··​0x004176b0·​75742020·​20202020·​20202020·​20202020·​ut··············102 ··​0x004176b0·​75742020·​20202020·​20202020·​20202020·​ut··············
103 ··​0x004176c0·​20202020·​20202020·​20202020·​20202020·················103 ··​0x004176c0·​20202020·​20202020·​20202020·​20202020·················
104 ··​0x004176d0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​104 ··​0x004176d0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​
105 ··​0x004176e0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​105 ··​0x004176e0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
106 ··​0x004176f0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​106 ··​0x004176f0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 780, 9 lines modifiedOffset 780, 9 lines modified
780 ··​0x0061ded0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·780 ··​0x0061ded0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
781 ··​0x0061dee0·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor781 ··​0x0061dee0·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
782 ··​0x0061def0·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1782 ··​0x0061def0·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
783 ··​0x0061df00·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​783 ··​0x0061df00·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
784 ··​0x0061df10·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​784 ··​0x0061df10·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
785 ··​0x0061df20·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·785 ··​0x0061df20·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
786 ··​0x0061df30·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui786 ··​0x0061df30·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
787 ··​0x0061df40·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201787 ··​0x0061df40·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
788 ··​0x0061df50·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​788 ··​0x0061df50·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​
/usr/local/bin/cd-hit-est
objdump --line-numbers --disassemble --section=.text {}
Offset 1917, 16 lines modifiedOffset 1917, 16 lines modified
1917 ··​4041ac:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1917 ··​4041ac:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1918 ··​4041af:​»       ​53···················»       ​push···​%rbx1918 ··​4041af:​»       ​53···················»       ​push···​%rbx
1919 ··​4041b0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1919 ··​4041b0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1920 ··​4041b7:​»       ​48·​8b·​05·​d2·​9e·​21·​00·»       ​mov····​0x219ed2(%rip)​,​%rax········1920 ··​4041b7:​»       ​48·​8b·​05·​d2·​9e·​21·​00·»       ​mov····​0x219ed2(%rip)​,​%rax········
1921 ··​4041be:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1921 ··​4041be:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1922 ··​4041c5:​»       ​00·1922 ··​4041c5:​»       ​00·
1923 ··​4041c6:​»       ​31·​c0················»       ​xor····​%eax,​%eax1923 ··​4041c6:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1924 ··​4041c8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1924 ··​4041c8:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1925 ··​4041cf:​»       ​30·​20·​32·1925 ··​4041cf:​»       ​31·​20·​32·
1926 ··​4041d2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1926 ··​4041d2:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1927 ··​4041d6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1927 ··​4041d6:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1928 ··​4041da:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1928 ··​4041da:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1929 ··​4041df:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1929 ··​4041df:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1930 ··​4041e4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1930 ··​4041e4:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1931 ··​4041e9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1931 ··​4041e9:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1932 ··​4041f0:​»       ​00·1932 ··​4041f0:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 88, 15 lines modifiedOffset 88, 15 lines modified
88 ··​0x00417620·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========88 ··​0x00417620·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========
89 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================89 ··​0x00417630·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
90 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================90 ··​0x00417640·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
91 ··​0x00417650·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================91 ··​0x00417650·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
92 ··​0x00417660·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​92 ··​0x00417660·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​
93 ··​0x00417670·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​93 ··​0x00417670·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​
94 ··​0x00417680·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​94 ··​0x00417680·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​
95 ··​0x00417690·​2025732c·​2031323a·​34383a33·​340a0000··​%s,​·12:​48:​34.​.​.​95 ··​0x00417690·​2025732c·​2032313a·​35303a32·​390a0000··​%s,​·21:​50:​29.​.​.​
96 ··​0x004176a0·​20202020·​20202020·​20202020·​20202020·················96 ··​0x004176a0·​20202020·​20202020·​20202020·​20202020·················
97 ··​0x004176b0·​20202020·​20202020·​20202020·​4f757470·············​Outp97 ··​0x004176b0·​20202020·​20202020·​20202020·​4f757470·············​Outp
98 ··​0x004176c0·​75742020·​20202020·​20202020·​20202020·​ut··············98 ··​0x004176c0·​75742020·​20202020·​20202020·​20202020·​ut··············
99 ··​0x004176d0·​20202020·​20202020·​20202020·​20202020·················99 ··​0x004176d0·​20202020·​20202020·​20202020·​20202020·················
100 ··​0x004176e0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​100 ··​0x004176e0·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​
101 ··​0x004176f0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​101 ··​0x004176f0·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
102 ··​0x00417700·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​102 ··​0x00417700·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 780, 9 lines modifiedOffset 780, 9 lines modified
780 ··​0x0061ded0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·780 ··​0x0061ded0·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
781 ··​0x0061dee0·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor781 ··​0x0061dee0·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
782 ··​0x0061def0·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1782 ··​0x0061def0·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
783 ··​0x0061df00·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​783 ··​0x0061df00·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
784 ··​0x0061df10·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​784 ··​0x0061df10·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
785 ··​0x0061df20·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·785 ··​0x0061df20·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
786 ··​0x0061df30·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui786 ··​0x0061df30·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
787 ··​0x0061df40·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201787 ··​0x0061df40·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
788 ··​0x0061df50·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​788 ··​0x0061df50·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​
/usr/local/bin/cd-hit-est-2d
objdump --line-numbers --disassemble --section=.text {}
Offset 1982, 16 lines modifiedOffset 1982, 16 lines modified
1982 ··​4042ec:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp1982 ··​4042ec:​»       ​48·​89·​fd·············»       ​mov····​%rdi,​%rbp
1983 ··​4042ef:​»       ​53···················»       ​push···​%rbx1983 ··​4042ef:​»       ​53···················»       ​push···​%rbx
1984 ··​4042f0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp1984 ··​4042f0:​»       ​48·​81·​ec·​98·​00·​00·​00·»       ​sub····​$0x98,​%rsp
1985 ··​4042f7:​»       ​48·​8b·​05·​f2·​9e·​21·​00·»       ​mov····​0x219ef2(%rip)​,​%rax········1985 ··​4042f7:​»       ​48·​8b·​05·​f2·​9e·​21·​00·»       ​mov····​0x219ef2(%rip)​,​%rax········
1986 ··​4042fe:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​1986 ··​4042fe:​»       ​48·​89·​84·​24·​88·​00·​00·»       ​mov····​%rax,​0x88(%rsp)​
1987 ··​404305:​»       ​00·1987 ··​404305:​»       ​00·
1988 ··​404306:​»       ​31·​c0················»       ​xor····​%eax,​%eax1988 ··​404306:​»       ​31·​c0················»       ​xor····​%eax,​%eax
1989 ··​404308:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203031206e754a,​%rax1989 ··​404308:​»       ​48·​b8·​4a·​75·​6e·​20·​31·»       ​mov····​$0x32203131206e754a,​%rax
1990 ··​40430f:​»       ​30·​20·​32·1990 ··​40430f:​»       ​31·​20·​32·
1991 ··​404312:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​1991 ··​404312:​»       ​48·​89·​14·​24··········»       ​mov····​%rdx,​(%rsp)​
1992 ··​404316:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​1992 ··​404316:​»       ​89·​4c·​24·​08··········»       ​mov····​%ecx,​0x8(%rsp)​
1993 ··​40431a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​1993 ··​40431a:​»       ​48·​89·​44·​24·​20·······»       ​mov····​%rax,​0x20(%rsp)​
1994 ··​40431f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​1994 ··​40431f:​»       ​44·​89·​44·​24·​0c·······»       ​mov····​%r8d,​0xc(%rsp)​
1995 ··​404324:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax1995 ··​404324:​»       ​48·​8d·​44·​24·​21·······»       ​lea····​0x21(%rsp)​,​%rax
1996 ··​404329:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​1996 ··​404329:​»       ​c7·​44·​24·​28·​30·​31·​36·»       ​movl···​$0x363130,​0x28(%rsp)​
1997 ··​404330:​»       ​00·1997 ··​404330:​»       ​00·
readelf --wide --hex-dump=.rodata {}
Offset 91, 15 lines modifiedOffset 91, 15 lines modified
91 ··​0x00417790·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========91 ··​0x00417790·​3a202569·​0a0a0000·​3d3d3d3d·​3d3d3d3d·​:​·​%i.​.​.​.​========
92 ··​0x004177a0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================92 ··​0x004177a0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
93 ··​0x004177b0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================93 ··​0x004177b0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
94 ··​0x004177c0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================94 ··​0x004177c0·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​3d3d3d3d·​================
95 ··​0x004177d0·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​95 ··​0x004177d0·​3d3d3d3d·​3d3d3d3d·​00000000·​00000000·​========.​.​.​.​.​.​.​.​
96 ··​0x004177e0·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​96 ··​0x004177e0·​50726f67·​72616d3a·​2043442d·​4849542c·​Program:​·​CD-​HIT,​
97 ··​0x004177f0·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​97 ··​0x004177f0·​2056342e·​3620282b·​4f70656e·​4d50292c··​V4.​6·​(+OpenMP)​,​
98 ··​0x00417800·​2025732c·​2031323a·​34383a33·​340a0000··​%s,​·12:​48:​34.​.​.​98 ··​0x00417800·​2025732c·​2032313a·​35303a32·​390a0000··​%s,​·21:​50:​29.​.​.​
99 ··​0x00417810·​20202020·​20202020·​20202020·​20202020·················99 ··​0x00417810·​20202020·​20202020·​20202020·​20202020·················
100 ··​0x00417820·​20202020·​20202020·​20202020·​4f757470·············​Outp100 ··​0x00417820·​20202020·​20202020·​20202020·​4f757470·············​Outp
101 ··​0x00417830·​75742020·​20202020·​20202020·​20202020·​ut··············101 ··​0x00417830·​75742020·​20202020·​20202020·​20202020·​ut··············
102 ··​0x00417840·​20202020·​20202020·​20202020·​20202020·················102 ··​0x00417840·​20202020·​20202020·​20202020·​20202020·················
103 ··​0x00417850·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​103 ··​0x00417850·​00000000·​00000000·​2d2d2d2d·​2d2d2d2d·​.​.​.​.​.​.​.​.​-​-​-​-​-​-​-​-​
104 ··​0x00417860·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​104 ··​0x00417860·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
105 ··​0x00417870·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​105 ··​0x00417870·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​2d2d2d2d·​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​-​
readelf --wide --hex-dump=.data {}
Offset 780, 9 lines modifiedOffset 780, 9 lines modified
780 ··​0x0061e030·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·780 ··​0x0061e030·​6f737a65·​77736b69·​20262041·​64616d20·​oszewski·​&·​Adam·
781 ··​0x0061e040·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor781 ··​0x0061e040·​476f647a·​696b2e20·​42696f69·​6e666f72·​Godzik.​·​Bioinfor
782 ··​0x0061e050·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1782 ··​0x0061e050·​6d617469·​63732c20·​28323030·​31292031·​matics,​·​(2001)​·​1
783 ··​0x0061e060·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​783 ··​0x0061e060·​373a3238·​322d3238·​33000000·​00000000·​7:​282-​283.​.​.​.​.​.​.​
784 ··​0x0061e070·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​784 ··​0x0061e070·​00000000·​00000000·​00000000·​00000000·​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​.​
785 ··​0x0061e080·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·785 ··​0x0061e080·​09093d3d·​3d3d3d3d·​2043442d·​48495420·​.​.​======·​CD-​HIT·
786 ··​0x0061e090·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui786 ··​0x0061e090·​76657273·​696f6e20·​342e3620·​28627569·​version·​4.​6·​(bui
787 ··​0x0061e0a0·​6c74206f·​6e204a75·​6e203130·​20323031·​lt·​on·​Jun·​10·​201787 ··​0x0061e0a0·​6c74206f·​6e204a75·​6e203131·​20323031·​lt·​on·​Jun·​11·​201
788 ··​0x0061e0b0·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​788 ··​0x0061e0b0·​3629203d·​3d3d3d3d·​3d000000·​ffffffff·​6)​·​======.​.​.​.​.​.​.​