=>> Building biology/python-nexus build started at Fri Dec 3 12:45:44 MSK 2021 port directory: /usr/ports/biology/python-nexus package name: py310-python-nexus-1.63 building for: FreeBSD 13-amd64-default-py310-job-04 13.0-RELEASE-p4 FreeBSD 13.0-RELEASE-p4 amd64 maintained by: wen@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 429 Apr 6 2021 /usr/ports/biology/python-nexus/Makefile Poudriere version: poudriere-git-3.3.99.20211130 Host OSVERSION: 1300139 Jail OSVERSION: 1300139 Job Id: 04 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p4 UNAME_r=13.0-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.99.20211130 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-py310/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/13-amd64-default-py310/04/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=13-amd64-default-py310 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-py310/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.3.99.20211130 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py310 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py310 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.10" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310/.cache HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 PATH=/wrkdirs/usr/ports/biology/python-nexus/work-py310/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310/.cache HOME=/wrkdirs/usr/ports/biology/python-nexus/work-py310 PATH=/wrkdirs/usr/ports/biology/python-nexus/work-py310/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.10 PYTHON_LIBDIR=lib/python3.10 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.10/site-packages PYTHON_SUFFIX=310 PYTHON_EXT_SUFFIX=.cpython-310 PYTHON_VER=3.10 PYTHON_VERSION=python3.10 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/python-nexus" EXAMPLESDIR="share/examples/python-nexus" DATADIR="share/python-nexus" WWWDIR="www/python-nexus" ETCDIR="etc/python-nexus" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/python-nexus DOCSDIR=/usr/local/share/doc/python-nexus EXAMPLESDIR=/usr/local/share/examples/python-nexus WWWDIR=/usr/local/www/python-nexus ETCDIR=/usr/local/etc/python-nexus --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes #### /usr/local/etc/poudriere.d/make.conf #### PETITECHEZ_AGREE_LICENSE= yes _LICENSE_STATUS= accepted #OPTIONS_UNSET+= DOXYGEN BOOTSTRAP OPTIONS_UNSET+= LATEX LTO BUILD_ALL_PYTHON_FLAVORS= yes .if ${.CURDIR:T} == "llvm11" || ${.CURDIR:T} == "llvm12" || ${.CURDIR:T} == "llvm13" || ${.CURDIR:T} == "gcc-arm-embedded" || ${.CURDIR:T} == "llvm-devel" || ${.CURDIR:T} == "llvm-cheri" BROKEN= no heavt crap from ports .endif #### /usr/local/etc/poudriere.d/py310-make.conf #### DEFAULT_VERSIONS+= python=3.10 python3=3.10 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 34275 open files (-n) 1024 virtual mem size (kbytes, -v) 4194304 swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py310-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5.pkg [13-amd64-default-py310-job-04] Installing pkg-1.17.5... [13-amd64-default-py310-job-04] Extracting pkg-1.17.5: .......... done ===> py310-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py310-python-nexus-1.63 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user => python-nexus-1.63.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/python-nexus/python-nexus-1.63.tar.gz python-nexus-1.63.tar.gz 37 kB 1159 kBps 00s ===> Fetching all distfiles required by py310-python-nexus-1.63 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py310-python-nexus-1.63 for building => SHA256 Checksum OK for python-nexus-1.63.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py310-python-nexus-1.63 for building ===> Extracting for py310-python-nexus-1.63 => SHA256 Checksum OK for python-nexus-1.63.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py310-python-nexus-1.63 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py310-python-nexus-1.63 depends on package: py310-setuptools>0 - not found ===> Installing existing package /packages/All/py310-setuptools-57.0.0.pkg [13-amd64-default-py310-job-04] Installing py310-setuptools-57.0.0... [13-amd64-default-py310-job-04] `-- Installing python310-3.10.0_1... [13-amd64-default-py310-job-04] | `-- Installing gettext-runtime-0.21... [13-amd64-default-py310-job-04] | | `-- Installing indexinfo-0.3.1... [13-amd64-default-py310-job-04] | | `-- Extracting indexinfo-0.3.1: .... done [13-amd64-default-py310-job-04] | `-- Extracting gettext-runtime-0.21: .......... done [13-amd64-default-py310-job-04] | `-- Installing libffi-3.3_1... [13-amd64-default-py310-job-04] | `-- Extracting libffi-3.3_1: .......... done [13-amd64-default-py310-job-04] | `-- Installing mpdecimal-2.5.1... [13-amd64-default-py310-job-04] | `-- Extracting mpdecimal-2.5.1: .......... done [13-amd64-default-py310-job-04] | `-- Installing readline-8.1.1... [13-amd64-default-py310-job-04] | `-- Extracting readline-8.1.1: .......... done [13-amd64-default-py310-job-04] `-- Extracting python310-3.10.0_1: .......... done [13-amd64-default-py310-job-04] Extracting py310-setuptools-57.0.0: .......... done ===== Message from python310-3.10.0_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py310-gdbm databases/py-gdbm@py310 py310-sqlite3 databases/py-sqlite3@py310 py310-tkinter x11-toolkits/py-tkinter@py310 ===> py310-python-nexus-1.63 depends on package: py310-setuptools>0 - found ===> Returning to build of py310-python-nexus-1.63 ===> py310-python-nexus-1.63 depends on file: /usr/local/bin/python3.10 - found ===> py310-python-nexus-1.63 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_2.pkg [13-amd64-default-py310-job-04] Installing ccache-3.7.12_2... [13-amd64-default-py310-job-04] Extracting ccache-3.7.12_2: .......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_2: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py310-python-nexus-1.63 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py310-python-nexus-1.63 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py310-python-nexus-1.63 Traceback (most recent call last): File "", line 1, in File "setup.py", line 3, in from nexus import __version__ as version File "/wrkdirs/usr/ports/biology/python-nexus/work-py310/python-nexus-1.63/nexus/__init__.py", line 136, in from nexus import tools File "/wrkdirs/usr/ports/biology/python-nexus/work-py310/python-nexus-1.63/nexus/tools/__init__.py", line 3, in from nexus.tools.check_zeros import check_zeros, remove_zeros File "/wrkdirs/usr/ports/biology/python-nexus/work-py310/python-nexus-1.63/nexus/tools/check_zeros.py", line 4, in from nexus.tools.sites import new_nexus_without_sites File "/wrkdirs/usr/ports/biology/python-nexus/work-py310/python-nexus-1.63/nexus/tools/sites.py", line 2, in from collections import Counter, Iterable ImportError: cannot import name 'Iterable' from 'collections' (/usr/local/lib/python3.10/collections/__init__.py) *** Error code 1 Stop. make: stopped in /usr/ports/biology/python-nexus =>> Cleaning up wrkdir ===> Cleaning for py310-python-nexus-1.63 build of biology/python-nexus@py310 | py310-python-nexus-1.63 ended at Fri Dec 3 12:46:06 MSK 2021 build time: 00:00:23 !!! build failure encountered !!!