# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	seqan-apps
#	seqan-apps/pkg-plist
#	seqan-apps/distinfo
#	seqan-apps/Makefile
#	seqan-apps/pkg-descr
#
echo c - seqan-apps
mkdir -p seqan-apps > /dev/null 2>&1
echo x - seqan-apps/pkg-plist
sed 's/^X//' >seqan-apps/pkg-plist << 'd7a764383381cda4646bcb8ac6e4be0d'
Xbin/alf
Xbin/bam2roi
Xbin/bed_sort.sh
Xbin/bisar
Xbin/casbar
Xbin/compute_gain
Xbin/dfi
Xbin/fiona
Xbin/four2three
Xbin/fx_bam_coverage
Xbin/gff_sort.sh
Xbin/gustaf
Xbin/gustaf_mate_joining
Xbin/insegt
Xbin/mason_frag_sequencing
Xbin/mason_genome
Xbin/mason_materializer
Xbin/mason_methylation
Xbin/mason_simulator
Xbin/mason_splicing
Xbin/mason_variator
Xbin/micro_razers
Xbin/pair_align
Xbin/param_chooser
Xbin/plot.awk
Xbin/ps2pswLinks.gawk
Xbin/rabema_build_gold_standard
Xbin/rabema_evaluate
Xbin/rabema_prepare_sam
Xbin/razers
Xbin/razers3
Xbin/rep_sep
Xbin/roi_feature_projection
Xbin/roi_plot_9.sh
Xbin/roi_plot_thumbnails
Xbin/roi_sort.sh
Xbin/s4_join
Xbin/s4_search
Xbin/sak
Xbin/sam2matrix
Xbin/samcat
Xbin/seqan_tcoffee
Xbin/seqcons2
Xbin/sgip
Xbin/snp_store
Xbin/splazers
Xbin/stellar
Xbin/tree_recon
Xbin/yara_indexer
Xbin/yara_mapper
Xshare/doc/alf/LICENSE
Xshare/doc/alf/README
Xshare/doc/alf/example/small.fasta
Xshare/doc/bs_tools/LICENSE
Xshare/doc/bs_tools/README
Xshare/doc/dfi/LICENSE
Xshare/doc/dfi/README
Xshare/doc/dfi/example/fasta1.fa
Xshare/doc/dfi/example/fasta2.fa
Xshare/doc/fiona/LICENSE
Xshare/doc/fiona/README
Xshare/doc/fiona/example/reads.fa
Xshare/doc/fx_tools/LICENSE
Xshare/doc/fx_tools/README
Xshare/doc/gustaf/LICENSE
Xshare/doc/gustaf/README
Xshare/doc/gustaf/example/adeno.fa
Xshare/doc/gustaf/example/adeno_modified.fa
Xshare/doc/gustaf/example/adeno_modified_reads.fa
Xshare/doc/gustaf/example/stellar.gff
Xshare/doc/insegt/LICENSE
Xshare/doc/insegt/README
Xshare/doc/insegt/example/annoOutput.gff
Xshare/doc/insegt/example/annotations.gff
Xshare/doc/insegt/example/readOutput.gff
Xshare/doc/insegt/example/tupleOutput.gff
Xshare/doc/mason2/LICENSE
Xshare/doc/mason2/README
Xshare/doc/mason2/README.mason_frag_sequencing
Xshare/doc/mason2/README.mason_genome
Xshare/doc/mason2/README.mason_materializer
Xshare/doc/mason2/README.mason_methylation
Xshare/doc/mason2/README.mason_simulator
Xshare/doc/mason2/README.mason_splicing
Xshare/doc/mason2/README.mason_variator
Xshare/doc/mason2/example/adeno_virus.fa
Xshare/doc/micro_razers/LICENSE
Xshare/doc/micro_razers/README
Xshare/doc/micro_razers/example/genome.fa
Xshare/doc/micro_razers/example/reads.fa
Xshare/doc/micro_razers/example/reads.fa.result
Xshare/doc/ngs_roi/LICENSE
Xshare/doc/ngs_roi/R/ngsroi_0.1.tar.gz
Xshare/doc/ngs_roi/R/ngsroi_0.1.zip
Xshare/doc/ngs_roi/README
Xshare/doc/ngs_roi/example/dmel.bed
Xshare/doc/ngs_roi/example/dmel.gtf
Xshare/doc/ngs_roi/example/example.bam
Xshare/doc/pair_align/LICENSE
Xshare/doc/pair_align/README
Xshare/doc/param_chooser/LICENSE
Xshare/doc/param_chooser/README
Xshare/doc/rabema/LICENSE
Xshare/doc/rabema/README
Xshare/doc/razers/LICENSE
Xshare/doc/razers/README
Xshare/doc/razers/example/genome.fa
Xshare/doc/razers/example/reads.fa
Xshare/doc/razers/example/reads2.fa
Xshare/doc/razers3/LICENSE
Xshare/doc/razers3/README
Xshare/doc/razers3/example/genome.fa
Xshare/doc/razers3/example/reads.fa
Xshare/doc/razers3/example/reads2.fa
Xshare/doc/rep_sep/LICENSE
Xshare/doc/rep_sep/README
Xshare/doc/sak/LICENSE
Xshare/doc/sak/README
Xshare/doc/sak/README.sak.txt
Xshare/doc/sak/man/sak.1
Xshare/doc/sam2matrix/LICENSE
Xshare/doc/sam2matrix/README
Xshare/doc/samcat/LICENSE
Xshare/doc/samcat/README
Xshare/doc/searchjoin/LICENSE
Xshare/doc/searchjoin/README
Xshare/doc/seqan_tcoffee/LICENSE
Xshare/doc/seqan_tcoffee/README
Xshare/doc/seqan_tcoffee/example/seq.fa
Xshare/doc/seqcons2/LICENSE
Xshare/doc/seqcons2/README
Xshare/doc/sgip/LICENSE
Xshare/doc/sgip/README
Xshare/doc/sgip/example/iso_m2D_m196.A01
Xshare/doc/sgip/example/iso_r01_m200.A00
Xshare/doc/sgip/example/iso_r01_m200.A01
Xshare/doc/sgip/example/iso_r01_m200.B00
Xshare/doc/sgip/example/iso_r01_m200.B01
Xshare/doc/sgip/example/latin-4
Xshare/doc/sgip/example/lattice-4
Xshare/doc/sgip/example/sts-7
Xshare/doc/snp_store/LICENSE
Xshare/doc/snp_store/README
Xshare/doc/snp_store/example/exampleGenome.fa
Xshare/doc/snp_store/example/exampleReads.gff
Xshare/doc/splazers/LICENSE
Xshare/doc/splazers/README
Xshare/doc/splazers/example/genome.fa
Xshare/doc/splazers/example/reads.fa
Xshare/doc/splazers/example/reads.fa.result
Xshare/doc/stellar/LICENSE
Xshare/doc/stellar/README
Xshare/doc/stellar/example/NC_001474.fasta
Xshare/doc/stellar/example/NC_001477.fasta
Xshare/doc/stellar/example/reads.fasta
Xshare/doc/tree_recon/LICENSE
Xshare/doc/tree_recon/README
Xshare/doc/tree_recon/example/example.dist
Xshare/doc/yara/LICENSE
Xshare/doc/yara/README.rst
d7a764383381cda4646bcb8ac6e4be0d
echo x - seqan-apps/distinfo
sed 's/^X//' >seqan-apps/distinfo << 'f5a45301e1732257794f52442adbac91'
XSHA256 (seqan-seqan-seqan-v2.1.1_GH0.tar.gz) = df083d5939d7e73fd00bbc6bb291ac7ea7b8d446cf89a9758fdffdc0eca9ec1c
XSIZE (seqan-seqan-seqan-v2.1.1_GH0.tar.gz) = 110874831
f5a45301e1732257794f52442adbac91
echo x - seqan-apps/Makefile
sed 's/^X//' >seqan-apps/Makefile << 'df0a7b09629a9e39ca5a00b7c7b34e93'
X# Created by: h2
X# $FreeBSD: head/biology/seqan/Makefile 381791 2015-03-21 11:53:27Z marino $
X
XPORTNAME=	seqan-apps
XPORTVERSION=	2.1.1
XDISTVERSIONPREFIX=	seqan-v
XCATEGORIES=	biology
X
XMAINTAINER=	h2+fbsdports@fsfe.org
XCOMMENT=	Official Bioinformatic applications based on the SeqAn library
X
XLICENSE=	BSD3CLAUSE LGPL3 GPLv3
XLICENSE_COMB=	multi
X
XBUILD_DEPENDS=	boost-libs>0:devel/boost-libs
X
XUSE_GITHUB=	yes
XGH_ACCOUNT=	seqan
XGH_PROJECT=	seqan
X
X# once #199603 is resolved, do the following instead of USE_GCC
X# USES=		cmake:outsource compiler:openmp,c++14-lang
XUSES=		cmake:outsource
XCMAKE_ARGS=	-DSEQAN_BUILD_SYSTEM="SEQAN_RELEASE_APPS"
X
XUSE_GCC=	4.9+
X
X.include <bsd.port.mk>
df0a7b09629a9e39ca5a00b7c7b34e93
echo x - seqan-apps/pkg-descr
sed 's/^X//' >seqan-apps/pkg-descr << '186f61e45508de379410d079867d827e'
XSeqAn is an open source C++ library of efficient algorithms
Xand data structures for the analysis of sequences with the
Xfocus on biological data. 
X
XThis port contains applications built on SeqAn and developed
Xwithin the SeqAn project. Among them are famous read mappers
Xlike RazerS and Yara, as well as many other tools. Some
Xapplications are packaged seperately and the library
Xcan be found at biology/seqan.
X
XWWW: http://www.seqan.de/
186f61e45508de379410d079867d827e
exit